Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03141 and RBAM_019020

See Amino acid alignment / Visit BSNT_03141 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:00
# Commandline: needle
#    -asequence dna-align/BSNT_03141___yocN.1.9828.seq
#    -bsequence dna-align/RBAM_019020___yocN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03141___yocN-RBAM_019020___yocN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03141___yocN-RBAM_019020___yocN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03141___yocN
# 2: RBAM_019020___yocN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 256
# Identity:     167/256 (65.2%)
# Similarity:   167/256 (65.2%)
# Gaps:          44/256 (17.2%)
# Score: 528.5
# 
#
#=======================================

BSNT_03141___      1 ATGTTCTTTTCTCCCTCCG----TCGTGAATGTCGGCGGATTTAAAATCA     46
                     |||.|.||||    |.|||    |.||.|||||.||.||.||||||.|.|
RBAM_019020__      1 ATGATGTTTT----CGCCGGTTTTGGTAAATGTAGGAGGCTTTAAAGTAA     46

BSNT_03141___     47 ATACAATGGACCGTGGTTCCTCTTTAACACTCGGTCCGTATCAGCAGGTC     96
                     ||.||.|.|||||.|||||.||..|.||..||||.|||||||||||..||
RBAM_019020__     47 ATGCAGTCGACCGGGGTTCTTCCATTACGATCGGCCCGTATCAGCAAATC     96

BSNT_03141___     97 GATTACTTTTTATCAGCTAAAATAA-ATCAA----GGGTTTGGAGAAGAA    141
                     |||||.||||||||     .||||| |||||    ||.||.||.||||||
RBAM_019020__     97 GATTATTTTTTATC-----CAATAAGATCAACTACGGATTCGGTGAAGAA    141

BSNT_03141___    142 AATGGCGACTTTACTCCTCTTGTCGTACCGATT----------TCAAATG    181
                     |||||.||          .|||.||  ||||||          |||..|.
RBAM_019020__    142 AATGGTGA----------TTTGGCG--CCGATTTATATCCCCATCAGTTC    179

BSNT_03141___    182 TATT--AGATGCAGATCTTGTTGATTCGAACTCAGCGAAAAAC-AGTGTG    228
                     ||||  .|||.|.|||||..|||||||||||||.| ||||||| ||..|.
RBAM_019020__    180 TATTGCTGATCCGGATCTCATTGATTCGAACTCCG-GAAAAACAAGCATT    228

BSNT_03141___    229 GTGTAA    234
                     .|.|||
RBAM_019020__    229 ATATAA    234


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