Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03150 and RBAM_019090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:01
# Commandline: needle
# -asequence dna-align/BSNT_03150___yocR.1.9828.seq
# -bsequence dna-align/RBAM_019090___yocR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03150___yocR-RBAM_019090___yocR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03150___yocR-RBAM_019090___yocR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03150___yocR
# 2: RBAM_019090___yocR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1351
# Identity: 1050/1351 (77.7%)
# Similarity: 1050/1351 (77.7%)
# Gaps: 26/1351 ( 1.9%)
# Score: 4013.5
#
#
#=======================================
BSNT_03150___ 1 GTGAAGGAAGCAAATCAATGGTCTTCGAAGCTCGGCTTTATTTTAGCCGC 50
|||||.|||||.|||||||||||.||.|||||.||.|||||||||||..|
RBAM_019090__ 1 GTGAAAGAAGCTAATCAATGGTCATCTAAGCTGGGATTTATTTTAGCTAC 50
BSNT_03150___ 51 GGCAGGATCAGCTATCGGGCTTGGTGCGATATGGAAATTCCCATATGTTG 100
|||.||.||.||.||||||||.||.||.||||||||.|||||.||.||.|
RBAM_019090__ 51 GGCCGGCTCTGCAATCGGGCTCGGCGCAATATGGAAGTTCCCTTACGTAG 100
BSNT_03150___ 101 CCGGAACCAGCGGAGGAGGCGCATTTTTACTTATTTTTATTTTATTTACG 150
|.||||||||||||||.|||||.|||.|.||||||||||||||||||||.
RBAM_019090__ 101 CGGGAACCAGCGGAGGCGGCGCTTTTCTGCTTATTTTTATTTTATTTACT 150
BSNT_03150___ 151 GTTTTAATCGGACTGCCTTTATTGTTAGGTGAATTCATCATAGGCAGAAG 200
|||||||||||||||||..|.|||.|.|.||||||.||.||.|||||||.
RBAM_019090__ 151 GTTTTAATCGGACTGCCGCTTTTGCTTGCTGAATTTATTATCGGCAGAAA 200
BSNT_03150___ 201 AACACAGAAAGATGCCGTTCAGTCCTATAAAACACTTGCTCCAGGAACGA 250
||||||.|||.|.||||||.|.||||||||..|.||.||.||.||.|..|
RBAM_019090__ 201 AACACAAAAAAACGCCGTTGAATCCTATAAGGCGCTCGCGCCGGGGAAAA 250
BSNT_03150___ 251 AGTGGCATTGGATCGGTTATTTAGGCATGGTGACGTGCTTTATTCTTCTA 300
|||||||.||||||||.|||.|.||.||..|.|||||.||||||||..||
RBAM_019090__ 251 AGTGGCACTGGATCGGATATCTCGGAATCATTACGTGTTTTATTCTATTA 300
BSNT_03150___ 301 TCTTTCTACAGTGTCGTAGGCGGATGGATTTTAATTTATATTATAAAAGG 350
||.||||||||.||.||.||.||||||||.|||||.||.|||||||||||
RBAM_019090__ 301 TCCTTCTACAGCGTAGTGGGGGGATGGATATTAATCTACATTATAAAAGG 350
BSNT_03150___ 351 CTTCACTGGCGGTTTATCGCAAACATCTGGTTTTGATACGATATTT-GCA 399
|||.||.|||||.|||||||...|.||.||.|||||||||.||||| .|.
RBAM_019090__ 351 CTTTACAGGCGGCTTATCGCTTTCTTCGGGATTTGATACGTTATTTATCG 400
BSNT_03150___ 400 AGTACCATTTCAAATCCTTATTTGGCTGTAGGAGGCCAGCTGCTCTTTAT 449
| |||||||||||||||||||...||.||....|||||||||||.|||||
RBAM_019090__ 401 A-TACCATTTCAAATCCTTATGCAGCCGTTTTCGGCCAGCTGCTGTTTAT 449
BSNT_03150___ 450 GGTGGTAACAATTTTAGTTGTTGCAAAAGGGGTAAGCAGCGGAATTGAAA 499
.|||.|.||.|||||||||||.|||||||||||.||||||||.|||||||
RBAM_019090__ 450 CGTGCTGACGATTTTAGTTGTGGCAAAAGGGGTGAGCAGCGGCATTGAAA 499
BSNT_03150___ 500 AAGCAAGCCAAGTATTAATGCCGGCGCTTTTTCT----ATTATTCATCAT 545
|||..|||||.||.||.||||||||.||.|||.| .|||||| |
RBAM_019090__ 500 AAGTGAGCCAGGTGTTGATGCCGGCTCTGTTTATTCTGTTTATTC----T 545
BSNT_03150___ 546 TTTAATGGTGCGTTCGGTTACACT---TGATGGCGCGATGGAAGGAATCA 592
.||||||.|.||.||.|||||.|| |||||..||.| |||||.|.|
RBAM_019090__ 546 CTTAATGATCCGCTCCGTTACGCTGCATGATGCAGCAA---AAGGATTAA 592
BSNT_03150___ 593 AATTTTTCCTCATGCCTGATTTAACTGCAATTGATGCCAATACCATTTTA 642
||||.||..|.|||||||||||....||.||.|||||||||||.||||||
RBAM_019090__ 593 AATTCTTTTTTATGCCTGATTTTGGCGCGATGGATGCCAATACTATTTTA 642
BSNT_03150___ 643 TATGCAATGGGACAATCCTTTTTCTTATTAAGTGTCGGTGTATCTGTCAT 692
|||||.|||||||||||.|||||||..|||||.|||||.||.||.||.||
RBAM_019090__ 643 TATGCGATGGGACAATCATTTTTCTCGTTAAGCGTCGGAGTGTCCGTAAT 692
BSNT_03150___ 693 GGTAACGTATAGCGCTTATTTAGAGAAACAGGAAAATCTGGTACAGTCCG 742
|||.||.||.|||||.||||||||.|||.|.||||||.|.||.||.||||
RBAM_019090__ 693 GGTTACATACAGCGCATATTTAGAAAAAGAAGAAAATATTGTTCAATCCG 742
BSNT_03150___ 743 CTGTATCTGTAACTGTTATGAACATG--CTTGTTGCTGTAATGGCCGGAA 790
|.|||||.||.|| |.|||.|| ||| |||||||||||.|||||.|||.
RBAM_019090__ 743 CCGTATCGGTGAC-GGTATTAA-ATGTCCTTGTTGCTGTGATGGCGGGAG 790
BSNT_03150___ 791 TTGCGATTTTTCCAGCTGTATTTTCATTCGGCCTCAAGCCAGACCAAGGC 840
|.|||||||||||.||.||.|||.||||||||||||||||.||.||||||
RBAM_019090__ 791 TGGCGATTTTTCCGGCGGTGTTTGCATTCGGCCTCAAGCCGGATCAAGGC 840
BSNT_03150___ 841 CCGGTTCTGTTATTTAACGTTCTGCCGACTGTGTTTAATCAAATGCCGTT 890
|||...||.|||||||||||.||||||||.||.|||||||||||||||||
RBAM_019090__ 841 CCGCAGCTTTTATTTAACGTGCTGCCGACCGTCTTTAATCAAATGCCGTT 890
BSNT_03150___ 891 CGGAATTATCTTTTTATTAGCATTTTTACTTCTATTTTTATTTGCTGCAT 940
.||.||..|.||||||.|.||.|||||.||.||.|||||||||||..|..
RBAM_019090__ 891 GGGCATCGTGTTTTTACTCGCCTTTTTGCTGCTGTTTTTATTTGCGACGC 940
BSNT_03150___ 941 TGACATCTGCTTTTTCAATGCTGGAAATTTTGGTCGCAGTACTGTCGAAA 990
|||||||.||||||||||||||.||||||||.||.||.||..||||.|||
RBAM_019090__ 941 TGACATCGGCTTTTTCAATGCTTGAAATTTTAGTTGCTGTTTTGTCAAAA 990
BSNT_03150___ 991 GGCGAT--GTCAATAAGAGAAAACGATTCGCTTGGTTAGGCGGAATTGCT 1038
|||||| |.|| ||..|.||.||.|..||.|||.|.||.|||.|||||
RBAM_019090__ 991 GGCGATTCGGCA--AAACGGAAGCGGTATGCATGGATCGGGGGACTTGCT 1038
BSNT_03150___ 1039 ATTTTTATTGTCGGTGTGCCGTCTGCATTGTCATACGGTGTCTTAAGTGA 1088
||.|||||||||||.||.||.||.||..||||.|||||..||||.|||||
RBAM_019090__ 1039 ATATTTATTGTCGGGGTCCCTTCGGCGCTGTCGTACGGAATCTTGAGTGA 1088
BSNT_03150___ 1089 CGTCTCTATATTTCATCTGTCTATTTTTGATGCGGCCGACTATCTTGTGA 1138
.||.|||||.|||||.|....|||||||||.||.||.||.|.|||.||.|
RBAM_019090__ 1089 TGTTTCTATTTTTCACCGCAGTATTTTTGACGCTGCGGATTTTCTGGTCA 1138
BSNT_03150___ 1139 GCAATATTTTAATGCCGTTAGGTGCGTTACTGATTTCGATTTTTGTCCCG 1188
|||||.|.|||||||||.|.||.|||.|..|.|||.|..||||.||.|||
RBAM_019090__ 1139 GCAATGTCTTAATGCCGCTGGGCGCGCTTTTAATTGCCGTTTTCGTACCG 1188
BSNT_03150___ 1189 CTAAAAATACCGAAACAGGAT-TTGTTTGACGAGCTGAAAAGCGGTTCCA 1237
.|.|||||.|||||||| ||| .||||||||||.|||||||||||||||.
RBAM_019090__ 1189 TTGAAAATCCCGAAACA-GATGCTGTTTGACGAACTGAAAAGCGGTTCCG 1237
BSNT_03150___ 1238 ATCTCAAACGAAAGTGGTTTGCGGTTTGGCTGCTGCTTATTCGATATTTA 1287
.|.|.||||||||.||||||||.||.|||||.||..|.||.||.|||.|.
RBAM_019090__ 1238 GTATAAAACGAAAATGGTTTGCAGTCTGGCTCCTATTAATCCGTTATGTG 1287
BSNT_03150___ 1288 TCTCCTGTTGCCATTATCATCGTGTTTTTGCATGTGGTAGGGATTTTTTA 1337
.|||||||.||||||||.|||||.|||.||||.||..|.||.||||||||
RBAM_019090__ 1288 GCTCCTGTAGCCATTATTATCGTTTTTCTGCACGTCCTTGGTATTTTTTA 1337
BSNT_03150___ 1338 A 1338
|
RBAM_019090__ 1338 A 1338
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