Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03154 and RBAM_019140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:02
# Commandline: needle
# -asequence dna-align/BSNT_03154___yojO.1.9828.seq
# -bsequence dna-align/RBAM_019140___yojO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03154___yojO-RBAM_019140___yojO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03154___yojO-RBAM_019140___yojO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03154___yojO
# 2: RBAM_019140___yojO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1953
# Identity: 1502/1953 (76.9%)
# Similarity: 1502/1953 (76.9%)
# Gaps: 72/1953 ( 3.7%)
# Score: 5777.5
#
#
#=======================================
BSNT_03154___ 1 ATGAAATTTATCAAATTTAACGACAGCACGATTGATTCATTTTTATTTAT 50
|||||.||||||||||||||||||||||||||||||||.|||||.||.||
RBAM_019140__ 1 ATGAAGTTTATCAAATTTAACGACAGCACGATTGATTCGTTTTTGTTCAT 50
BSNT_03154___ 51 GATGCTGACTGATTTGGCCAAAACACTCACC--AAG-AGTGAAGCGGTAG 97
|||||||||||||.|||||||||||||.||| ||| |||||| ||.|
RBAM_019140__ 51 GATGCTGACTGATCTGGCCAAAACACTGACCAGAAGCAGTGAA---GTTG 97
BSNT_03154___ 98 AAGTGGAGTATGGCGTTCAGTCCTATTACAATCCATTTGAAAAGAAAATC 147
|||||||.||.|||||.|||||.||.||||||||.||||||||||||||.
RBAM_019140__ 98 AAGTGGAATACGGCGTGCAGTCTTACTACAATCCCTTTGAAAAGAAAATT 147
BSNT_03154___ 148 TATATGAGCCACTTTTGGAAAGACAGGGCAGCTGAGGACATGGAAGCGGG 197
||.|||||||||||||||||||||.|..||||.|.|||.||||||||.||
RBAM_019140__ 148 TACATGAGCCACTTTTGGAAAGACCGATCAGCCGGGGATATGGAAGCCGG 197
BSNT_03154___ 198 TCTGAAAAGCGACGTCTACCTGCGTTCAGTCGGAACAAGATATAGCTCGC 247
.|||||||||||.|||||..||||..|.|||||||||.|....|||||..
RBAM_019140__ 198 CCTGAAAAGCGATGTCTATTTGCGCGCTGTCGGAACACGCAGCAGCTCAT 247
BSNT_03154___ 248 TGCATGAGTTTGCGAACTTTTTGAATGATATCCATCGTCATCTCACCTTT 297
|.|..||.||||||...|||||.|||||..|.||.||.|||.|||||...
RBAM_019140__ 248 TTCGGGAATTTGCGGGGTTTTTAAATGACGTTCACCGGCATTTCACCCGC 297
BSNT_03154___ 298 AAAAGTTTTGCCAAGCAGCTCTTTATGCTGCTTGAAGACATTAGGATCGA 347
.||||.||||||||||||||.||||||||||||||.||.||.||.||.||
RBAM_019140__ 298 CAAAGCTTTGCCAAGCAGCTGTTTATGCTGCTTGAGGATATCAGAATTGA 347
BSNT_03154___ 348 AGAATGC--ATCAAACGTGAGCGTCCGGGTACGAAACATGTATTTGCGAA 395
||| || ||||||...||.||.|||||.|||||||.|||.|||..|||
RBAM_019140__ 348 AGA--GCTGATCAAAAAAGAACGGCCGGGAACGAAACGTGTTTTTCAGAA 395
BSNT_03154___ 396 GCGAAAAGACATGTACAGAAAACATTTCTCAACCCAGCTGACCTTAAATT 445
|||.|..||.||||||||.|||.|||||.|.||.||||||||.||.||||
RBAM_019140__ 396 GCGGAGGGAGATGTACAGGAAATATTTCACGACGCAGCTGACATTGAATT 445
BSNT_03154___ 446 TGGAACGAAGCATTTTTACCGATGCGCTCTTTTGCGCGATCTATGTCAAG 495
|.|||||.||||||||.|||||.||..|.|.|||||||||.|.|||||||
RBAM_019140__ 446 TAGAACGGAGCATTTTCACCGACGCTTTGTATTGCGCGATGTTTGTCAAG 495
BSNT_03154___ 496 CTCACAGCGGAATCGCCGCTCGAGACCCTTCCATCCATGCGTGAAGATAT 545
||.||.||.||.||.|||||.||...|.||||.|||||||.||||.||||
RBAM_019140__ 496 CTGACGGCTGAGTCTCCGCTTGAAGGCATTCCTTCCATGCATGAACATAT 545
BSNT_03154___ 546 CGATCTGATGCGCCCGTTTATTGAGCAGCAGCTCTTGCGTGTGTATGAAG 595
.|||.|||||...||||.||||||.|..||||||.|.||.||||||||.|
RBAM_019140__ 546 TGATATGATGATACCGTATATTGAACGTCAGCTCATCCGGGTGTATGAGG 595
BSNT_03154___ 596 CAGATTCGAC-------ACGGCAGGTTCTGAAAATTGTTGAGGACCTCAT 638
|.|||||.|| |..||| |||||....||.||||||||
RBAM_019140__ 596 CGGATTCTACGGAACAAATCGCA-------AAAATAACGGAAGACCTCAT 638
BSNT_03154___ 639 GGACGGACTTGAAGAGGTACTCGATAAAGACATGTTGAACACCTACTTCT 688
|||.||.|||||.||.||.||.||.|||||.|||.|||||||.|||||.|
RBAM_019140__ 639 GGAAGGCCTTGATGAAGTGCTTGAGAAAGATATGCTGAACACGTACTTTT 688
BSNT_03154___ 689 TTTTGCCTGAGCTTGATTACGCAAAAGCTGCAGAACAGCCGTTATTTGAA 738
||.||||.||.||||||||||.||||||.||.|||.||||.|||||.||
RBAM_019140__ 689 TTCTGCCGGAACTTGATTACGAAAAAGCGGCTGAAGAGCCTTTATTCGA- 737
BSNT_03154___ 739 GAAGAG--AAAAAAGCGCCGAAGCTGAGTGATGACATCACGCTTCCAAAA 786
|||.| |||||||||||...|.|.|||||.||..|||||||.||..|.
RBAM_019140__ 738 -AAGTGTAAAAAAAGCGCCTTCGTTAAGTGACGATCTCACGCTCCCTGAG 786
BSNT_03154___ 787 CAATCAGACGGTGATGAGGATATCCATGAAGAAGAAATGCCGACATGGCA 836
...||.|||||.|||||.||.||||.||||||..|||||...||.|||||
RBAM_019140__ 787 TCTTCCGACGGAGATGAAGAAATCCTTGAAGAGAAAATGAATACGTGGCA 836
BSNT_03154___ 837 CCGGGAAACAGAAGCACCGTCTAAAAGCTTCCTTCAATTTGATATTGAAC 886
|||||||||.|||||.|||||.|||||.||||||||||||||||||||.|
RBAM_019140__ 837 CCGGGAAACCGAAGCGCCGTCAAAAAGTTTCCTTCAATTTGATATTGAGC 886
BSNT_03154___ 887 ACGGCGCAAAATCAGATTTAGGAAAAGATGCTTCAAGGGAAGGCGACGAT 936
|||||||.|||||||||.|.||.|||||.||..|.||.||||||||.||.
RBAM_019140__ 887 ACGGCGCGAAATCAGATCTTGGGAAAGACGCGGCCAGAGAAGGCGATGAC 936
BSNT_03154___ 937 GGAGATCAGGCCCTTGGCTCTGTTCAAGGATCAGCCAGACAAACGAAACG 986
||.||.|||||.||.|||||.||||||||.||.||..|.||.||||||.|
RBAM_019140__ 937 GGTGACCAGGCGCTCGGCTCCGTTCAAGGTTCCGCACGTCAGACGAAAAG 986
BSNT_03154___ 987 GAAAGACTATTCCAAGCTGGAAGCGCTGGAGTC---TCAAAAAGACCA-G 1032
..|.||.||.|||||.|||||||||||.||.|| |||..|.||.|| |
RBAM_019140__ 987 AGAGGATTACTCCAAACTGGAAGCGCTTGAATCCATTCAGGATGAACATG 1036
BSNT_03154___ 1033 CCGAACGGAGCGGGTATGGCTGACGGCAAAGAAAATAAATATGCATTTCC 1082
|.||.|||||..||||||||||.||||||||.||||.|||.||.||
RBAM_019140__ 1037 ----AGGGCGCGGGGCTGGCTGACGGAAAAGAAAACAAATTTGCCTTCCC 1082
BSNT_03154___ 1083 AATTTAT-AAAGAACCGC-------AGCCGGCAACCAGTGAAGAGGAGCT 1124
..||||| ||| ||| ||| |...|| |||||||||||.
RBAM_019140__ 1083 GGTTTATCAAA----CGCCTCATAAAGC--GTCTCC--TGAAGAGGAGCA 1124
BSNT_03154___ 1125 TTCTTATAAACAGCAGGCAAAAACGATTGAATCGTATCAAAAGCGTTTGA 1174
.|||||||||.|.||||||||||||||.|||||.||||||||.||..|||
RBAM_019140__ 1125 GTCTTATAAAGAACAGGCAAAAACGATAGAATCATATCAAAAACGCCTGA 1174
BSNT_03154___ 1175 AACAAATGATTCAAAAAACGCTTGAACATAAAAAAACATTGCCGAGAACA 1224
|.||.|||||.||||||||.|||||.||.||||||||..|.|||.|.||.
RBAM_019140__ 1175 AGCAGATGATACAAAAAACACTTGAGCACAAAAAAACGCTCCCGCGGACC 1224
BSNT_03154___ 1225 GATCTTCATGCCGGGAGACTGAATAATAAGCTTCTTCGTTACTTCACTGA 1274
||.|||||.||.||..|.||||||...||.||..|.||.||.||.||.||
RBAM_019140__ 1225 GACCTTCACGCAGGCCGGCTGAATCGCAAACTGATCCGCTATTTTACGGA 1274
BSNT_03154___ 1275 GCGAAATCCGCGCCTGTTCTACAAAAAGCAAGAACCGTCTACAGAAATCG 1324
|||.||.||||||||.||||..||||||||.||.||||||.||||.||.|
RBAM_019140__ 1275 GCGGAACCCGCGCCTTTTCTTTAAAAAGCAGGACCCGTCTTCAGACATTG 1324
BSNT_03154___ 1325 ACGCAGTTTTTACATTGCTGGTCGATTGTTCCGCCAGCATGTTCGACAAA 1374
||||.||||||||||||||.|||||||||||.||||||||||||||||||
RBAM_019140__ 1325 ACGCCGTTTTTACATTGCTTGTCGATTGTTCGGCCAGCATGTTCGACAAA 1374
BSNT_03154___ 1375 ATGGACGAAACAAAACGAGGAATCGTGTTGTTTCACGAAGCGCTGAAATC 1424
|||||.|||||||||.||||.|||||..|.|||||.|||||..|||||||
RBAM_019140__ 1375 ATGGATGAAACAAAAAGAGGGATCGTTCTTTTTCATGAAGCCTTGAAATC 1424
BSNT_03154___ 1425 GGTAGCGGTTCCGCATCAGATTGTCGGTTTTTGGGAGGACACAAATGATG 1474
.||..|.||.|||||.|||||.|||||.|||||||||||.|||||.||.|
RBAM_019140__ 1425 AGTGTCCGTACCGCACCAGATCGTCGGATTTTGGGAGGATACAAACGAAG 1474
BSNT_03154___ 1475 CAACCGAAACAAGCCAGCCAAACTATTTCAATACGGTTATTCCCTTCCAA 1524
|.||||||||.||||||||.||.|..||||||||.||.|||||.||
RBAM_019140__ 1475 CGACCGAAACGAGCCAGCCGAATTTCTTCAATACCGTCATTCCGTT---- 1520
BSNT_03154___ 1525 TCATCATTAAGA----------CAAGATTCTGGACCGGCCATTATGCAGC 1564
|.|||| ||.|...|.||.|||...||.|||||||
RBAM_019140__ 1521 ------TGAAGAGTCGCTGCTGCAGGCGGCGGGTCCGCTGATCATGCAGC 1564
BSNT_03154___ 1565 TTGAGCCAGAAGAAGATAACCGTGACGGGTACGCAATTAGGCAGATGACG 1614
|||.|||.||||||||||||.|.|||||.|||||.||.||.||.||||||
RBAM_019140__ 1565 TTGCGCCTGAAGAAGATAACAGAGACGGATACGCCATCAGACAAATGACG 1614
BSNT_03154___ 1615 AAAAAAATGCTGCATCGCAGCGAGGCGCAAAAGTTCTTAATTGTTTTCTC 1664
|||.|..||.|||..||.||.|||||||||||.||.|||||.||.||.||
RBAM_019140__ 1615 AAACAGCTGATGCGGCGGAGTGAGGCGCAAAAATTTTTAATCGTGTTTTC 1664
BSNT_03154___ 1665 AGATGGAGAGCCGGCCGCATTTGGCTACGAACAAAATGGGATCGTTGATA 1714
|||.|||||||||||.|||||.||.|||||||||||.||.|||||.||||
RBAM_019140__ 1665 AGACGGAGAGCCGGCAGCATTCGGATACGAACAAAACGGCATCGTCGATA 1714
BSNT_03154___ 1715 CAAGTGAGGCGGTTATCGAAGCCCGAAAAAGAGGAATAGAAGTGATAAAT 1764
|.||.|||||.||.||||||||..||||||.|||.||||||||.||||||
RBAM_019140__ 1715 CGAGCGAGGCTGTCATCGAAGCGAGAAAAAAAGGGATAGAAGTCATAAAT 1764
BSNT_03154___ 1765 GTTTTTCTCTCCAACTCAGAAATAGAAGAATCGCAAATGAAGACGATCCA 1814
||||||||.|||||..|.|.||||||.|||||.||.|||||.||.||.||
RBAM_019140__ 1765 GTTTTTCTGTCCAATACTGCAATAGAGGAATCACAGATGAAAACCATTCA 1814
BSNT_03154___ 1815 GGATATGTACGGAAAATTCAGTATATTTGTCCCGGATGTTGATCAGCTAC 1864
|||||||||||||||.|.||||||.|||||.||||||||.||||||||.|
RBAM_019140__ 1815 GGATATGTACGGAAAGTACAGTATTTTTGTTCCGGATGTCGATCAGCTGC 1864
BSNT_03154___ 1865 CGGATGTTTTGTATCCGCTGCTGAAAAAACTGCTTCATAAAAGCATAGGA 1914
|.|||||..||||||||||..|||||||||||||||||||||||||||||
RBAM_019140__ 1865 CCGATGTGCTGTATCCGCTCTTGAAAAAACTGCTTCATAAAAGCATAGGA 1914
BSNT_03154___ 1915 TAG 1917
|||
RBAM_019140__ 1915 TAG 1917
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