Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03163 and RBAM_019200
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:03
# Commandline: needle
# -asequence dna-align/BSNT_03163___yojI.1.9828.seq
# -bsequence dna-align/RBAM_019200___yojI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03163___yojI-RBAM_019200___yojI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03163___yojI-RBAM_019200___yojI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03163___yojI
# 2: RBAM_019200___yojI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1420
# Identity: 1013/1420 (71.3%)
# Similarity: 1013/1420 (71.3%)
# Gaps: 122/1420 ( 8.6%)
# Score: 3590.0
#
#
#=======================================
BSNT_03163___ 1 ATGAAAGAAACTCAAAACGCCCGG-GAAAAAATCAAACAGCTCTTGCACA 49
.|||.|||||| .||.|||..||| .||||..|||.||||||.||.||.|
RBAM_019200__ 1 TTGAGAGAAAC-GAACACGATCGGCCAAAAGGTCAGACAGCTGTTACATA 49
BSNT_03163___ 50 TTTTAATACCGATATTCATTACCCAAGCGGGGCTTTCTCTGATCACTTTT 99
|.||.||.|||||.||.||.||.||.|||||.|||||.||||||||.|||
RBAM_019200__ 50 TCTTCATTCCGATTTTAATCACACAGGCGGGCCTTTCCCTGATCACCTTT 99
BSNT_03163___ 100 CTAGATACTGTGATGTCAGGGAAAGTCAGCCCCGCTGATTTAGCTGGTGT 149
.|.|||||.|||||||||||||||||.|||.|.||.||||||||.||.||
RBAM_019200__ 100 TTGGATACGGTGATGTCAGGGAAAGTGAGCGCTGCCGATTTAGCCGGGGT 149
BSNT_03163___ 150 CGCCATTGGCTCAAGCCTTTGGACCCCTGTTTACACAGGACTTGCAGGTA 199
.||.||.||.||||||||.|||||.||.|||||.||.||.||||||||.|
RBAM_019200__ 150 TGCAATCGGTTCAAGCCTGTGGACGCCGGTTTATACGGGCCTTGCAGGAA 199
BSNT_03163___ 200 TATTAATGGCGGTCAC-CCCGATTGTCGCTCAGTTACTAGGCGCAG--AG 246
||||||||||.||.|| |||| ||||..|.|||.|..|.||.||.| ||
RBAM_019200__ 200 TATTAATGGCCGTTACGCCCG-TTGTTTCGCAGCTGTTTGGAGCCGGCAG 248
BSNT_03163___ 247 AAAAAACAGAAGATTCCCTTTACTGTTTTACAAGCTGTATACGTGGCCGC 296
|.|||| .|||| |.||.|||.|.||..|.||.||.||.||.||.||.||
RBAM_019200__ 249 ACAAAA-GGAAG-TGCCGTTTTCCGTCATCCAGGCCGTTTATGTAGCGGC 296
BSNT_03163___ 297 GCTTCTTAGCATCGCCGTTTTAGTGATTGGATATGCTGCA--GTTGACCT 344
..||||.||....||.|||.|..||||.||.|.| |.|| |||||
RBAM_019200__ 297 CGTTCTCAGTGCGGCGGTTATCCTGATCGGCTTT--TTCACCGTTGA--- 341
BSNT_03163___ 345 TAT--TCTTGGCCGATT--------GAACCTTGATATTCACGTGCATC-- 382
||| ||||||...||| |||||| |||| ||
RBAM_019200__ 342 TATGATCTTGGGACATTGGGGGCTGGAACCT---------CGTG--TCCG 380
BSNT_03163___ 383 --AGATTGCTAAACACTTTTTAGGCTTTTTATCACTGGGAATTTTCCCTT 430
.|||.||.|||||||||||||||||||||||.||.||.|||||.||||
RBAM_019200__ 381 GACGATCGCCAAACACTTTTTAGGCTTTTTATCCCTCGGTATTTTTCCTT 430
BSNT_03163___ 431 TATTTGTTTACACCGTGTTGAGATCATTCATCGACTCATTAGGAAAAACG 480
|.|||||.||||||||.|||.|.||.||.||.||..||.|.||.||||||
RBAM_019200__ 431 TGTTTGTGTACACCGTTTTGCGCTCGTTTATTGATGCACTCGGCAAAACG 480
BSNT_03163___ 481 AGAGTCACCATGATGATTACACTCAGTTCTCTTCCAATCAATTTTGTATT 530
.|||||||.|||.|.|||||.||..|.||..|.||.||.||||||||.||
RBAM_019200__ 481 CGAGTCACAATGCTTATTACGCTTTGCTCATTGCCTATTAATTTTGTTTT 530
BSNT_03163___ 531 GAATTATGTATTTATCTTCGGGAAGTTCGGAATGCCGGCACTTGGAGGTG 580
.||||||||||||||.||||||||.|||...|||||||||.|.|||||.|
RBAM_019200__ 531 AAATTATGTATTTATTTTCGGGAAATTCAACATGCCGGCATTGGGAGGAG 580
BSNT_03163___ 581 TAGGCGCGGGGCTGGCATCCGCGTTAACTTACTGGTGTATCTGCATCATC 630
|.||.||||||||.||.|||||..|.||||||||.|||||.|||..||||
RBAM_019200__ 581 TCGGGGCGGGGCTCGCTTCCGCCCTGACTTACTGTTGTATTTGCGCCATC 630
BSNT_03163___ 631 AGTTTTTTCAT--TATTCATAAAAACGCA--------CCGTTTTCTGAAT 670
||.|||||.|| |.| ||| ||||||.|
RBAM_019200__ 631 AGCTTTTTTATCGTCT----------GCAGATTTGAGCCGTTTGC----- 665
BSNT_03163___ 671 ACGGGATTTTTCTTACCATGTATAAGTTCTCTTGGAAA------------ 708
|||| |||..||||| ||| |||||
RBAM_019200__ 666 -CGGG--------TACTCTGTAT---TTC----GGAAACTGTACCGTTTT 699
BSNT_03163___ 709 ---------GCATGCAAAAA---TTTGCTCAAAATCGGGCTGCCTATTGG 746
|.|||||.||| |||| ||||||||..|||||||.||
RBAM_019200__ 700 TCTCCGTCTGAATGCAGAAAGCTTTTG---AAAATCGGATTGCCTATCGG 746
BSNT_03163___ 747 GTTCGCCGTGTTTTTTGAAACGAGCATTTTCGCAGCTGTCACGCTTCTAA 796
.||.||.||.||||||||||||||||||||.||.||||||||.||.||.|
RBAM_019200__ 747 TTTTGCGGTATTTTTTGAAACGAGCATTTTTGCGGCTGTCACACTGCTTA 796
BSNT_03163___ 797 TGAGCCATTTTCATACAGTGACCATCGCGTCCCACCAGGCAGCCATGAAT 846
|||||||||||||.||.|||||.||.||..|||||||.||.||.||||||
RBAM_019200__ 797 TGAGCCATTTTCAGACGGTGACGATTGCAGCCCACCAAGCGGCAATGAAT 846
BSNT_03163___ 847 TTTGCGTCTCTTTTATATATGCTGCCGCTTAGCGTGTCCATGGCTCTAAC 896
|||||.|||||.||.||||||||||||||.|||||.||||||||..|.||
RBAM_019200__ 847 TTTGCTTCTCTCTTGTATATGCTGCCGCTCAGCGTATCCATGGCCATGAC 896
BSNT_03163___ 897 AATTGTTGTCGGATTTGAAGCGGGTGCAGCCCGTTTTAAGGATGCACGCT 946
.|||.|.|||||.||||||||.||.|||...||.|.||..|||||.||||
RBAM_019200__ 897 CATTTTGGTCGGCTTTGAAGCAGGCGCAAATCGCTATAGAGATGCCCGCT 946
BSNT_03163___ 947 CATATAGCTTAATCGGCATCATGATGGCGATCGGCTTTTCTTTGTTCACT 996
||||.||||..|||||.|||.||||||||.|..|.||||||||.|.|||.
RBAM_019200__ 947 CATACAGCTATATCGGGATCGTGATGGCGCTTAGTTTTTCTTTATGCACG 996
BSNT_03163___ 997 GCCGCCTGTATCCTTTTA---TTCAGAGAGCAAATTGCGGGCATGTACAC 1043
||.|| |.||.||||| ||||||..||||||.||.||.|||||.||
RBAM_019200__ 997 GCGGC---TTTCATTTTACTGTTCAGACCGCAAATCGCCGGAATGTATAC 1043
BSNT_03163___ 1044 TTCTGACCCCGATGTGCTCCGGCTGACACAGCACTTTTTAATTTATGCGC 1093
.||.||.||.|.|||||||..|.|||||||||||||||||||.|||||||
RBAM_019200__ 1044 ATCAGATCCGGCTGTGCTCATGTTGACACAGCACTTTTTAATCTATGCGC 1093
BSNT_03163___ 1094 TATTTTTTCAGCTTTCCGATGCTGTTGCCGCACCGATCCAGGGAGCACTC 1143
|.|||||.||||||||.|||||.||.||.||.|||||.||.||.||.||.
RBAM_019200__ 1094 TGTTTTTCCAGCTTTCTGATGCCGTAGCAGCTCCGATACAAGGCGCTCTG 1143
BSNT_03163___ 1144 AGAGGGTACAAAGATGTGAACTATACGCTTGCGGCCGCTTTTGTCTCTTA 1193
|||||.||.||.|||||.||||||||.||.|..||.||||||||.||.||
RBAM_019200__ 1144 AGAGGATATAAGGATGTCAACTATACACTCGGCGCGGCTTTTGTGTCGTA 1193
BSNT_03163___ 1194 CTGGGTCATTGGCCTTCCGGTCGGTTATATGGTCGGTACGTTTACAAGCC 1243
.|||.|.||.||.||||||||||||||....|||||.||.|.|||..|||
RBAM_019200__ 1194 TTGGATTATCGGGCTTCCGGTCGGTTACGCAGTCGGCACTTATACGGGCC 1243
BSNT_03163___ 1244 TCGGTGCATTCGGCTATTGGATTGGATTAATAGCGGGACTCGCCGCCGGA 1293
||||.||||.||||||.|||||.||.|||||.||.|||||.|||||.|||
RBAM_019200__ 1244 TCGGGGCATACGGCTACTGGATCGGGTTAATTGCAGGACTTGCCGCAGGA 1293
BSNT_03163___ 1294 GCAGTTGGGCTGTTTTTCAGGCTGGCAAAACTGCAAAAACGTTATTCGCA 1343
||.||.||..|.||.|||||.|||...|||||||||||||.||||..|.|
RBAM_019200__ 1294 GCTGTCGGTTTATTCTTCAGACTGATGAAACTGCAAAAACATTATGTGAA 1343
BSNT_03163___ 1344 AAAACAACA-CATTTAA--- 1359
|||| | .||||.|
RBAM_019200__ 1344 AAAA----ATGATTTCATAA 1359
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