Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03166 and RBAM_019210

See Amino acid alignment / Visit BSNT_03166 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:03
# Commandline: needle
#    -asequence dna-align/BSNT_03166___yojH.1.9828.seq
#    -bsequence dna-align/RBAM_019210___yojH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03166___yojH-RBAM_019210___yojH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03166___yojH-RBAM_019210___yojH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03166___yojH
# 2: RBAM_019210___yojH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 873
# Identity:     611/873 (70.0%)
# Similarity:   611/873 (70.0%)
# Gaps:          48/873 ( 5.5%)
# Score: 2004.0
# 
#
#=======================================

BSNT_03166___      1 ATGGCAAAAAACAAAAAAT--TATTCGAGTATCTTTCCCAGCATGCGGAA     48
                     |||.|  ||||||.|||.|  |.|.|||.|||.|..|..|.|..|||||.
RBAM_019210__      1 ATGCC--AAAACATAAACTGCTGTACGATTATTTAACTGAACGGGCGGAG     48

BSNT_03166___     49 ACCATCAGTTCA-ACATGGTATGAAACAATCGAGGAGACTGATCCCAATT     97
                     ..|||||| ||| |||||||.|||.||..|..|.||.||.|||||..|||
RBAM_019210__     49 GACATCAG-TCAGACATGGTTTGATACCCTTCATGATACGGATCCTGATT     97

BSNT_03166___     98 CCATTTATGCCTCAACAGACCCTGTTGTCATTCAC-AATTTAAAGAGCCA    146
                     |..|||||||.||.||.|||||.|.||| |.|||| |||.|.||.|..||
RBAM_019210__     98 CTGTTTATGCTTCTACTGACCCGGCTGT-ACTCACGAATCTGAAAAAACA    146

BSNT_03166___    147 GAATCTTGCCTTTAACTATAAAATAAACCGTATTTTTATAGATGATGAGG    196
                     .|||||.||.|||||.|||.|..|.||.||.||||||...||.||..|||
RBAM_019210__    147 AAATCTGGCGTTTAATTATCAGCTCAATCGGATTTTTTCTGAAGAGAAGG    196

BSNT_03166___    197 ACGTATACTTGCCTATAC--------TGAAAGAATGGGCTTTTGAAGTCA    238
                     |.|||        |||||        ||.||.|.|||||.||.||||.|.
RBAM_019210__    197 AAGTA--------TATACAGCGGCATTGGAAAAGTGGGCGTTCGAAGCCG    238

BSNT_03166___    239 CACAGGATCAAGAGCATTTAAAAACTCCTATCCACTATATTATTCGGGAG    288
                     |||.||||.||||.||||||||||||||.|||||.|||||||||||.|||
RBAM_019210__    239 CACGGGATGAAGAACATTTAAAAACTCCCATCCATTATATTATTCGCGAG    288

BSNT_03166___    289 TTTGTCAGAGTGAGAGATTTATATGTTTCCTATGTGAAAGAATTTGTCCA    338
                     |||.|.|||||..|.|||||.|||||...|.|||| .|||.|.||..|||
RBAM_019210__    289 TTTATAAGAGTTCGTGATTTGTATGTCGGCCATGT-CAAGCAGTTTACCA    337

BSNT_03166___    339 -TCTCAATCAGGATACTGTGAAAAGCGAAGAAGCCGAAGACCTGTAT--C    385
                      .||..||..|||.||.||||.|...|||||.||||||||  |.|||  |
RBAM_019210__    338 GACTTCATGCGGACACCGTGACAGAAGAAGATGCCGAAGA--TATATTCC    385

BSNT_03166___    386 ACGCCCTTATAAAAGCGTTTGATCTTGTGATTCATATTTTTATAGAAGAA    435
                     |..|.||.||.|||.||||||||.|.||.|||||||||||.|||||||||
RBAM_019210__    386 ATACGCTGATTAAATCGTTTGATGTGGTCATTCATATTTTCATAGAAGAA    435

BSNT_03166___    436 ATGTACAAAAACACAAGCCTTCAGCTTCAGGCCCAAAAAGATATGATTAC    485
                     |||||.||||||||||.|.||||||||.|.||.||||||||..|||||||
RBAM_019210__    436 ATGTATAAAAACACAAACATTCAGCTTGAAGCGCAAAAAGAATTGATTAC    485

BSNT_03166___    486 TGAATTGAGCGCTCCGGTCATCGTGCTGTTTCACAGCGTCGGACTGCTGC    535
                     .||..|.|||.|.|||||.||.|||||.|||.|||..|||||||||||||
RBAM_019210__    486 CGAGCTAAGCTCGCCGGTAATTGTGCTTTTTGACAATGTCGGACTGCTGC    535

BSNT_03166___    536 CTTTAATCGGAGATATTGATACAGTCCGCGCCAAGCTGATTATGGAAAAC    585
                     |..|.|||||.||||||||.||.|...|.||.||..||||..||||.||.
RBAM_019210__    536 CGCTGATCGGGGATATTGACACGGCAAGAGCAAAAATGATCTTGGAGAAT    585

BSNT_03166___    586 ACACTGCATCAATGTGCGAAAAAAAAG---GTGACACAACTGTATATTGA    632
                     ||.|||||.||.|||.|   |.|.|||   .|.||.||.|||||.|||||
RBAM_019210__    586 ACGCTGCACCAGTGTTC---AGAGAAGCGCATCACGCAGCTGTACATTGA    632

BSNT_03166___    633 TTTGTCAGGAGTAGCTGTGATTGATACGATGGTTGCCCATCAGCTGTTCA    682
                     |||.|||||.|||||..||||||||||||||||||||||.|||||.||||
RBAM_019210__    633 TTTATCAGGTGTAGCCATGATTGATACGATGGTTGCCCAACAGCTTTTCA    682

BSNT_03166___    683 GTCTGATTGAGGCGCTTCGTTTAATCGGTGTTTCTTCAACTTTGTCTGGA    732
                     ...|.|||||..|.||..|..|..||||.||.....|.||.||.||.|||
RBAM_019210__    683 CCTTAATTGAATCACTCGGAATGCTCGGCGTGAAAGCGACATTATCCGGA    732

BSNT_03166___    733 ATCCGTCCGGAAATCGCGCAAACAGCGGTTCAGCTAGG--TTTGTCTTTC    780
                     ||||||||.||||||||.|||||.|||||.|||||.||  |..||.||||
RBAM_019210__    733 ATCCGTCCTGAAATCGCCCAAACCGCGGTGCAGCTGGGACTGAGTTTTTC    782

BSNT_03166___    781 GAAGGTATTTCCTTGAGATCCACTCTCGCTT----CAGCAATTGCATCGG    826
                     .||  |.|.||..|.||.||    .||||||    .|||.||.||.||.|
RBAM_019210__    783 AAA--TTTATCAATAAGGTC----TTCGCTTGCAGAAGCGATCGCTTCCG    826

BSNT_03166___    827 ACTTAAAATTAAAAAAGGTATAA    849
                     |..|.|.|..||||||||.||||
RBAM_019210__    827 ATCTGACACAAAAAAAGGGATAA    849


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03166 and RBAM_019210

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
