Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03169 and RBAM_019240

See Amino acid alignment / Visit BSNT_03169 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:03
# Commandline: needle
#    -asequence dna-align/BSNT_03169.1.9828.seq
#    -bsequence dna-align/RBAM_019240.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03169-RBAM_019240.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03169-RBAM_019240.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03169
# 2: RBAM_019240
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 298
# Identity:     211/298 (70.8%)
# Similarity:   211/298 (70.8%)
# Gaps:          38/298 (12.8%)
# Score: 697.5
# 
#
#=======================================

BSNT_03169         1 ATGGACAATGATAAAGAGATAGTGAAAGCCTATGCTTCACTTTGGAATAA     50
                     ||||.||.|||||||||.||||..|||||||||....||||.||||||||
RBAM_019240        1 ATGGGCACTGATAAAGACATAGCAAAAGCCTATCAGGCACTGTGGAATAA     50

BSNT_03169        51 CCGATCTCTCGC-------ACATGATGACGCAGAAGCGGTAGCAG-AGGC     92
                     |||..|||||.|       || |..|||   ||||||||    || ||||
RBAM_019240       51 CCGCACTCTCCCGGCTTCAAC-TCTTGA---AGAAGCGG----AGAAGGC     92

BSNT_03169        93 GATTGATCTTGAGCTGTTGGATAAACGAACACATCCAAGACTCCGAA---    139
                     .|||||||||||.|||.|.|||.||.||||||||||.||.|||||.|   
RBAM_019240       93 AATTGATCTTGAACTGCTTGATCAAAGAACACATCCGAGGCTCCGGAAGT    142

BSNT_03169       140 -AACCGATGCTGGAAAAATATTTTGC---CGCGATTCAGCGCATTGTGAA    185
                      |.||||    |||||   |.|||||   .|||.|.|||||.|||||..|
RBAM_019240      143 CACCCGA----GGAAA---AGTTTGCTCTGGCGGTGCAGCGAATTGTAGA    185

BSNT_03169       186 TTCACAGCT-CGAACCGGCTGTGAAATATCAGCTGGTCAAATTACATACA    234
                     |||.|.||| || .|||..||.|||||||.|..||||..||.||||||| 
RBAM_019240      186 TTCCCGGCTGCG-GCCGATTGAGAAATATGAATTGGTTGAACTACATAC-    233

BSNT_03169       235 GAA-CG--TGCAGAGTATTTAAAAGAAGAAAGAGGGGAGCAATCATGA    279
                     ||| ||  |||  |.|.||||||||||||||||||||||||...||||
RBAM_019240      234 GAAGCGTTTGC--AATTTTTAAAAGAAGAAAGAGGGGAGCAGCTATGA    279


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