Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03172 and RBAM_019250

See Amino acid alignment / Visit BSNT_03172 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:03
# Commandline: needle
#    -asequence dna-align/BSNT_03172___yojE.1.9828.seq
#    -bsequence dna-align/RBAM_019250___yojE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03172___yojE-RBAM_019250___yojE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03172___yojE-RBAM_019250___yojE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03172___yojE
# 2: RBAM_019250___yojE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 940
# Identity:     659/940 (70.1%)
# Similarity:   659/940 (70.1%)
# Gaps:          86/940 ( 9.1%)
# Score: 2237.0
# 
#
#=======================================

BSNT_03172___      1 -----ATGCAATATTCAGAAACAAAAAAAGGCGTTATTTACACAGCCGTT     45
                          |.|.||||     |..|||.||||||..|.|||||.||.||...|
RBAM_019250__      1 GTGCAAGGGAATA-----ACGCAAGAAAAGGAATCATTTATACCGCTTGT     45

BSNT_03172___     46 TCCTTTATCATGTGGGGCCTGTTTCCGCTCTATTGGAAGCTTCTCGAACA     95
                     ||.||...|||||||||.|||||||||.||||.|||||.|||||.|||||
RBAM_019250__     46 TCTTTCGCCATGTGGGGGCTGTTTCCGGTCTACTGGAAACTTCTTGAACA     95

BSNT_03172___     96 GCTGCCGGCTCTTGATATTTTGGCTCATCGTATTATATGGTCTTTTGTTT    145
                     ..|.||.||..|.||.|||||.|||||.||.|||.|||||||.|||||||
RBAM_019250__     96 AATACCCGCATTGGACATTTTAGCTCACCGGATTTTATGGTCATTTGTTT    145

BSNT_03172___    146 TTATGTGTATCGTACTTT----TTTTCTTGCGGCAA-TGGAAAATAGGAT    190
                     |.||||||   ||.||||    |.|.|||..|  || |||||||..||||
RBAM_019250__    146 TCATGTGT---GTGCTTTTAACTGTGCTTAAG--AAGTGGAAAACCGGAT    190

BSNT_03172___    191 GGCAGGAGCTGCGCTC-TCTGAAAAAGAACGG-AGGGATCCT-----CTC    233
                     |||..||.||||| || |.||||    |.||| ||||..|||     |.|
RBAM_019250__    191 GGCGTGAACTGCG-TCTTTTGAA----ATCGGAAGGGGGCCTGCTGGCGC    235

BSNT_03172___    234 TTTATTTCTTGCTTCTATCCTGATTTCGATCAACTGGTTTGTATACATAT    283
                     |||.||||  |||||..|..|.|||||..|.||.||||||||.|||||||
RBAM_019250__    236 TTTTTTTC--GCTTCCGTTTTAATTTCCGTTAATTGGTTTGTGTACATAT    283

BSNT_03172___    284 GGGCTGTAAACCATGGCTTTTTGCTTGAGGCTAGTCTTGGCTATTACATT    333
                     ||||.||.||.||.||||||||||||||.||.|||||.||.||.||||||
RBAM_019250__    284 GGGCCGTCAATCACGGCTTTTTGCTTGAAGCAAGTCTCGGGTACTACATT    333

BSNT_03172___    334 AATCCGCTTGTATCAGTGCTCCTTGGG-ATTTTATTTTTAAAGGAAAAAC    382
                     ||||||||.||.||.||.|| .||||| ||..||||.|||||.|||||.|
RBAM_019250__    334 AATCCGCTCGTTTCCGTTCT-TTTGGGCATCCTATTCTTAAAAGAAAAGC    382

BSNT_03172___    383 TGAATCGCC----TGCAATTAGTGGCCGTTTCGATTGC---GGCAGCCGG    425
                     |.||    |    |||||..||..||||||||.|||||   |||.|||  
RBAM_019250__    383 TTAA----CAAGATGCAAACAGCAGCCGTTTCTATTGCCGGGGCGGCC--    426

BSNT_03172___    426 TGTCATCATCTCGGCGTTCCAATACGGCTCCATTCCTTATGTTGCGCTTC    475
                      ||.|||||.||.|||||.|||||.|||.|..||||||||.|.||..|.|
RBAM_019250__    427 -GTGATCATATCTGCGTTTCAATATGGCGCGGTTCCTTATATCGCATTGC    475

BSNT_03172___    476 TCCTCGCATTCAGCTTTGGGCTGTACGGGTTAAGCAAAAAAAGAACAAGC    525
                     |.||.|||||||||||.||.||||||||.|||.|.|||||||||||..||
RBAM_019250__    476 TGCTTGCATTCAGCTTCGGCCTGTACGGCTTATGTAAAAAAAGAACCCGC    525

BSNT_03172___    526 CTGCCGAGCGCCATCGGTTTAACGCTGGAAACATTCATGATTATGCCGAT    575
                     .||.|.|||.|.|||||..|.||||||||.||..|..||||||..|||..
RBAM_019250__    526 ATGTCCAGCACGATCGGACTGACGCTGGAGACGCTTTTGATTACCCCGGC    575

BSNT_03172___    576 TGCATTAGGGTATTT------GCTGTTCAGCGGACATG-----TTCAGCC    614
                     ||||.|    |||||      |.|.|.||||.|||..|     |||    
RBAM_019250__    576 TGCACT----TATTTATTTAGGATATACAGCTGACGGGAGCACTTC----    617

BSNT_03172___    615 AGCGGGTGC--AGAAAGCGGAGGGACGTGGCTGCTTCTCTTTTTGGCCGG    662
                       |||||.|  .|   |.|.|||.||.|||..|||.||.|||||.||.||
RBAM_019250__    618 --CGGGTCCTTGG---GGGCAGGAACATGGGCGCTCCTATTTTTCGCAGG    662

BSNT_03172___    663 TGTGTTTACGGCTTTGCCGCTCTTATTGTTTGCGGAAGGAGCGAAACGGC    712
                     .||.||||||||..|||||||.||..|||||||.||.||.||.||.||.|
RBAM_019250__    663 CGTATTTACGGCCCTGCCGCTGTTGCTGTTTGCAGAGGGGGCAAAGCGTC    712

BSNT_03172___    713 TGCCACTGTATCAAGTCGGTATCTTACAATATATTGCGCCGACCATTACC    762
                     ||||.||||||||||||||.||.||.||||||||.|||||||||||||||
RBAM_019250__    713 TGCCGCTGTATCAAGTCGGCATTTTGCAATATATAGCGCCGACCATTACC    762

BSNT_03172___    763 CTTCTGATCGGGCTGTTTGTTTACCATGAGCCATTTTCAAGCTCG-----    807
                     |||.||.||||..|.|||||.||.|||||.||.|||||     ||     
RBAM_019250__    763 CTTATGCTCGGCGTATTTGTGTATCATGAACCGTTTTC-----CGGGCAA    807

BSNT_03172___    808 AAGGCTTTTACATTCAGCTGTATATGGGCTGCGCTGATCTTGTTTACGTT    857
                     ||.||.|||||.||||..|||||||||||.||..||.|.||||||||.||
RBAM_019250__    808 AAAGCGTTTACCTTCATTTGTATATGGGCAGCATTGCTTTTGTTTACCTT    857

BSNT_03172___    858 TTCACAAGTGAAGTGGAAACGGGCGTCAAAAAGCCATTGA    897
                     ||||||..|.||.|||||.|||.||..||||||||..|.|
RBAM_019250__    858 TTCACAGATAAAATGGAAGCGGCCGATAAAAAGCCGCTAA    897


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