Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03194 and RBAM_019380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:06
# Commandline: needle
# -asequence dna-align/BSNT_03194___ctpA.1.9828.seq
# -bsequence dna-align/RBAM_019380___ctpA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03194___ctpA-RBAM_019380___ctpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03194___ctpA-RBAM_019380___ctpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03194___ctpA
# 2: RBAM_019380___ctpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1430
# Identity: 1069/1430 (74.8%)
# Similarity: 1069/1430 (74.8%)
# Gaps: 55/1430 ( 3.8%)
# Score: 3905.0
#
#
#=======================================
BSNT_03194___ 1 TTGAAACGGCAATTAAAACTGTTTTTTATTGTGCTGATCACTGCAGTTGT 50
|||||.||||||||.|||||||||||||||.|..||||||||||.||.|.
RBAM_019380__ 1 TTGAAGCGGCAATTTAAACTGTTTTTTATTATATTGATCACTGCGGTCGC 50
BSNT_03194___ 51 CGCTTCGGCGCTTACTTTATTTATTACGGGCAATTCCAGTATCCTGGGCC 100
.||.|||.|||||||..|.|||||.|||||||||.|.|..||..|.||
RBAM_019380__ 51 AGCCTCGTCGCTTACGCTGTTTATCACGGGCAATACGACCATTTTCGG-- 98
BSNT_03194___ 101 AAAAATCAACAA-GCAC----------AGGAGACAGCAAGTTCGACAAAT 139
|||| ||.| |.|| |||||||.||.||.||||
RBAM_019380__ 99 --------ACAAGGCTCGGCTGCTTTGACGA-ACAGCAAATTTGAGAAAT 139
BSNT_03194___ 140 TAAATAAAGCGTATGAGCAAATCAAAAGTGATTATTACCAAAAAACAGAT 189
|.||||||||.||.|||||.||.|||||||||||.||.||||||||||||
RBAM_019380__ 140 TCAATAAAGCCTACGAGCAGATTAAAAGTGATTACTATCAAAAAACAGAT 189
BSNT_03194___ 190 GATGACAAATTAGTAGACGGAGCAATTAAAGGAATGATTCA-ATCACTGG 238
||...||||||||||||||||||.||.|||||.|||| ||| .||.||||
RBAM_019380__ 190 GACAGCAAATTAGTAGACGGAGCGATAAAAGGCATGA-TCAGTTCCCTGG 238
BSNT_03194___ 239 ATGATCCGTATTCTACATATATGGATCAAGAGCAAGCGAAA-TCATTCGA 287
|||||||.||||||.|.||||||||.|...||.||| |||| ||.||.||
RBAM_019380__ 239 ATGATCCATATTCTTCTTATATGGACCCGCAGGAAG-GAAAGTCTTTTGA 287
BSNT_03194___ 288 CGAGACGATTTCAGCATCTTTTGAAGGAATCGGAGCCCAAGTAGAGGAGA 337
.||.||.|||||.||.||.||||||||.|||||.||.|||||.||.||.|
RBAM_019380__ 288 AGAAACCATTTCCGCTTCGTTTGAAGGCATCGGCGCACAAGTGGAAGAAA 337
BSNT_03194___ 338 AAGACGG-AGAAATCCTTATTGTATCCCCAATTAAAGGTTCACCTGCTGA 386
|.||||| || .|||||.||.|||||.||.||||||||.|||||.||.||
RBAM_019380__ 338 AGGACGGCAG-TATCCTGATCGTATCGCCGATTAAAGGGTCACCCGCGGA 386
BSNT_03194___ 387 AAAAGCCGGTATCAAACCGAGGGACCAAATCATTAAGGTAAATGGAAAAA 436
||||||.||..|.|||||||..|||||.|||.|.|||||.||.||.||||
RBAM_019380__ 387 AAAAGCGGGGGTTAAACCGAATGACCAGATCTTGAAGGTCAACGGCAAAA 436
BSNT_03194___ 437 GCGTAAAAGGCATGAATGTAAATGAAGCCGTCGCTTTAATCCGAGGCAAA 486
||||.||||||.|.||||||||.|||||||||||.||||||||.||||||
RBAM_019380__ 437 GCGTTAAAGGCCTTAATGTAAACGAAGCCGTCGCATTAATCCGCGGCAAA 486
BSNT_03194___ 487 AAGGGCACAAAGGTGAAGCTGGAACTGAACAGAGCGGGAGTGGGGAATAT 536
|||||.|||||.||.|||||.|..|||.||||||||||.||.||..||.|
RBAM_019380__ 487 AAGGGAACAAACGTCAAGCTTGTGCTGCACAGAGCGGGTGTCGGCGATCT 536
BSNT_03194___ 537 CGATCTTTCCATTAAGCGCGATACCATTCCTGTAGAGACTGTCTATTCAG 586
..|.||.||.||.||.||.||.|||||.||.||.||.||.||.||.||.|
RBAM_019380__ 537 GAACCTGTCGATCAAACGTGACACCATCCCGGTTGAAACGGTGTACTCTG 586
BSNT_03194___ 587 AGATGAAA----GACAACAACATTGGAGAAATTCAAATCACTTCTTTCTC 632
|.|||||| || .||||.||.|||||.||||||||.||.|||||
RBAM_019380__ 587 AAATGAAAAAAGGA----GACATCGGCGAAATCCAAATCACATCCTTCTC 632
BSNT_03194___ 633 TGAAACAACAGCTAAAGAGCTGACAGAT---GCGATTGACGGTTTAGAGA 679
.|||.|.||.||.|||||||||| || ||.||||||.|..|.||.|
RBAM_019380__ 633 CGAATCGACGGCAAAAGAGCTGA---ATTCAGCCATTGACAGCCTCGAAA 679
BSNT_03194___ 680 AAAAAGGCGCCAAAGGCTATATTTTAGACTTGAGAGGCAACCCGGGCGGC 729
||.||||.||.|||||.||.|||.|.||.||.||.||||||||||||||.
RBAM_019380__ 680 AACAAGGAGCGAAAGGATACATTCTCGATTTAAGGGGCAACCCGGGCGGA 729
BSNT_03194___ 730 TTAATGGAACAGGCGATTACGATGAGCAACCTGTTCATTGATAAAGGGAA 779
.|.|||||..|.||.||.|..|||||||||.||||.||.|||||||||||
RBAM_019380__ 730 CTGATGGATGAAGCCATCAAAATGAGCAACATGTTTATCGATAAAGGGAA 779
BSNT_03194___ 780 AAACATCATGCAGGTTGAATACAAAAACGGTTCAAAAGAAGTCATGAAGG 829
|||.|||||||||||.|||||||||.||||..|.|||||.||||||||.|
RBAM_019380__ 780 AAATATCATGCAGGTCGAATACAAAGACGGCACGAAAGAGGTCATGAAAG 829
BSNT_03194___ 830 C--CGAAAAAGAACGGAAAGTGACCAAGCCGACCGTCGTTTTAGTAAATG 877
| || |||||.||.||||||||.||.|||||.|||||..|.||.||||
RBAM_019380__ 830 CGACG--AAAGAGCGAAAAGTGACAAAACCGACAGTCGTCCTCGTCAATG 877
BSNT_03194___ 878 ACGGTACAGCAAGCGCAGCCGAAATTATGGCCGCTGCCCTTCATGAATCG 927
||||.||.||.|||||.||.|||||.|||.|.|||||.||.||||||||.
RBAM_019380__ 878 ACGGCACCGCGAGCGCCGCGGAAATCATGTCGGCTGCGCTGCATGAATCA 927
BSNT_03194___ 928 TCAAACGTACCGTTAATCGGCGAGACGACATTCGGAAAAGGTACAGTGCA 977
||...|.|.|||.|.||||||||||..||.|||||||||||.||.|||||
RBAM_019380__ 928 TCGGGCATTCCGCTGATCGGCGAGAAAACGTTCGGAAAAGGAACCGTGCA 977
BSNT_03194___ 978 AACGGCAAAAGAATATGATGATGGCTCTACTGTCAAACTGACAGTTGCCA 1027
.|||||||||||.||....||.||.|||||.||.|||||||||.|.||.|
RBAM_019380__ 978 GACGGCAAAAGATTACAGCGACGGTTCTACCGTTAAACTGACAATCGCTA 1027
BSNT_03194___ 1028 AATGGCTGACTGCTGACGGCGAATGGATTCACAAAAAAGGCATCAAGCCT 1077
||||||||||.||.|||||.||.||||||||.||||||||||||||.||.
RBAM_019380__ 1028 AATGGCTGACAGCGGACGGAGAGTGGATTCATAAAAAAGGCATCAAACCG 1077
BSNT_03194___ 1078 CAAGTGAAAGCTGAGCTGCCTGATTACGCGAAGCTGCCGTATTTGGACGC 1127
|||....|.|.|.||||.|||||.||.|||||.|||||||||||.||.||
RBAM_019380__ 1078 CAATATCAGGTTAAGCTTCCTGAATATGCGAACCTGCCGTATTTAGATGC 1127
BSNT_03194___ 1128 AGATAAAACGTACAAATCAGGTGATACAGGCACAAACGTCA--AAGTGGC 1175
..|.|||||.|||||||..||.|||.|.||.||.|.||||| || .||
RBAM_019380__ 1128 GAAAAAAACATACAAATACGGGGATTCCGGAACCACCGTCACCAA--TGC 1175
BSNT_03194___ 1176 TCAGAAAATGCTCAAAGCACTTGGTTACAAGGTAAACGTTAACAGTACGT 1225
.||.||||||||.|||||.||.||.||||..||.||.||.|||.|.||||
RBAM_019380__ 1176 GCAAAAAATGCTGAAAGCGCTGGGGTACAGCGTGAAAGTAAACGGCACGT 1225
BSNT_03194___ 1226 ATGACCAGGATTTTGTATCTGTCGTCAAACAGTTCCAGAAAAAAGAGGAG 1275
||||..|.|..||||.|...|.|||.|||||.|||||...|||||||.|.
RBAM_019380__ 1226 ATGATAAAGCATTTGAACAAGCCGTTAAACAATTCCAAGCAAAAGAGAAA 1275
BSNT_03194___ 1276 CTGAAAGAAACAGGCATACTGACTGGCGATACAACAACGAAATTAATGAT 1325
||||||.||||||||||..|.||.||.||.|||||..|.|||||.||||.
RBAM_019380__ 1276 CTGAAACAAACAGGCATTATAACGGGTGACACAACGGCAAAATTGATGAC 1325
BSNT_03194___ 1326 AGAACTTCAAAAGAAGCTGTCTGATAATGATACGCAAATGGAAAAGGCAA 1375
.||.||.|||||..||||..|.||.||.|||||.||||||.||||.||..
RBAM_019380__ 1326 GGATCTGCAAAAACAGCTTGCGGACAACGATACACAAATGAAAAAAGCCG 1375
BSNT_03194___ 1376 TTGAAACACTGAAAAAAGAA-ATGTAA--- 1401
|||||||||| |||.||||| |||.||
RBAM_019380__ 1376 TTGAAACACT-AAATAAGAATATGAAATAG 1404
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