Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03197 and RBAM_019400

See Amino acid alignment / Visit BSNT_03197 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:10
# Commandline: needle
#    -asequence dna-align/BSNT_03197___yodI.1.9828.seq
#    -bsequence dna-align/RBAM_019400___yodI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03197___yodI-RBAM_019400___yodI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03197___yodI-RBAM_019400___yodI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03197___yodI
# 2: RBAM_019400___yodI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 259
# Identity:     182/259 (70.3%)
# Similarity:   182/259 (70.3%)
# Gaps:          14/259 ( 5.4%)
# Score: 603.5
# 
#
#=======================================

BSNT_03197___      1 TTGGAGAGATATTATCATCTTTGCAAAAACCATCAAGGTAAAGTCGTCAG     50
                     .||.|.|..|||||||||||||||....|.||.||.||.|||||.|..||
RBAM_019400__      1 ATGCAAAACTATTATCATCTTTGCCGGCAGCACCAGGGAAAAGTAGCAAG     50

BSNT_03197___     51 AATTACAGAGAGAGGCGGGAGAGTTCACGTCGGCAGAAT--TACCCGTG-     97
                     |||||||||..||..|||.|||||.||||||||.|||||  |||..||| 
RBAM_019400__     51 AATTACAGAACGAAACGGCAGAGTCCACGTCGGAAGAATCGTACGGGTGA    100

BSNT_03197___     98 -TAACAAGAGACAGAGTTTTTATAGCTCCGACCGGCGGAGGGCCAAGAGG    146
                      |||||    .||.|||.|.|||.||.||...||||||..|.|..|||||
RBAM_019400__    101 CTAACA----GCAAAGTGTATATCGCCCCTGTCGGCGGCCGTCACAGAGG    146

BSNT_03197___    147 TTTCGGTTACGGATATTGGGGCGGTTATTGGGGA---TACGGAGCAGCTT    193
                     .|.|||.|.|||.||||||||.||   .||||||   |..||||||||.|
RBAM_019400__    147 ATACGGGTTCGGCTATTGGGGAGG---CTGGGGAGGCTGGGGAGCAGCCT    193

BSNT_03197___    194 ACGGGATTTCCCTCGGTTTAATTACAGGGGTCGCTCTTGCTGGTTTATTC    243
                     ||||.||...|||.|||||.|||||.||..|.||.||||..||||||.||
RBAM_019400__    194 ACGGTATCGGCCTTGGTTTCATTACCGGATTTGCGCTTGGAGGTTTACTC    243

BSNT_03197___    244 TTCTGGTAA    252
                     |||||||||
RBAM_019400__    244 TTCTGGTAA    252


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.