Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03212 and RBAM_019510

See Amino acid alignment / Visit BSNT_03212 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:17
# Commandline: needle
#    -asequence dna-align/BSNT_03212.1.9828.seq
#    -bsequence dna-align/RBAM_019510___yokU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03212-RBAM_019510___yokU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03212-RBAM_019510___yokU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03212
# 2: RBAM_019510___yokU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 299
# Identity:     209/299 (69.9%)
# Similarity:   209/299 (69.9%)
# Gaps:          40/299 (13.4%)
# Score: 749.5
# 
#
#=======================================

BSNT_03212         1 ATGAAAACATGCGAATGGTGCGGC-------------GAGCTTG--AAGC     35
                     .||||..|||||||.|||||||||             .||||||  |.||
RBAM_019510__      1 GTGAAGCCATGCGAGTGGTGCGGCAATCAGAAGGCATCAGCTTGTCAGGC     50

BSNT_03212        36 GGTGCCCGGCAGGAACACGGTGTACTGGGAGCTCCCTGATGGAACGAGGG     85
                     ||               |.||||||||||||||.|||||.||.|||||||
RBAM_019510__     51 GG---------------CTGTGTACTGGGAGCTTCCTGACGGTACGAGGG     85

BSNT_03212        86 CTATAGAACTGACAGACACCCCTGCCATGGTATGTTCTTCCTGCGGTATG    135
                     |.||||||.|.|||||.||.||.||..|.|..|||||.||||||||.|||
RBAM_019510__     86 CCATAGAAATTACAGAAACACCCGCATTCGCCTGTTCCTCCTGCGGCATG    135

BSNT_03212       136 ACCTATCAAGAGGAAAACACGGTTA---AGGAGATTGAGGATCAGCTGCT    182
                     ||.|||||.||||||   .||||.|   .|||.||.||..||||||| .|
RBAM_019510__    136 ACTTATCAGGAGGAA---GCGGTCATAGCGGAAATCGAAAATCAGCT-TT    181

BSNT_03212       183 TTTAATTCAA-ACAAAAAAACTGCCTGAAAGCCTGACATATCAGCAGCTC    231
                     |||.|.|||| .||||||||.|.||.||||..||.||||||||..||||.
RBAM_019510__    182 TTTTAGTCAATGCAAAAAAATTACCGGAAACACTCACATATCAAGAGCTG    231

BSNT_03212       232 ATGGAGACAGAAAGAATTTTGAAACGCAACTATTTTGACTTCTCCTGA-    279
                     ||||||||||||.|.||.||||||||.||.|||||||||||||||| | 
RBAM_019510__    232 ATGGAGACAGAACGGATCTTGAAACGGAATTATTTTGACTTCTCCT-AG    279


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