Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03225 and RBAM_019590

See Amino acid alignment / Visit BSNT_03225 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:19
# Commandline: needle
#    -asequence dna-align/BSNT_03225___cgeE.1.9828.seq
#    -bsequence dna-align/RBAM_019590___cgeE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03225___cgeE-RBAM_019590___cgeE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03225___cgeE-RBAM_019590___cgeE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03225___cgeE
# 2: RBAM_019590___cgeE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 875
# Identity:     551/875 (63.0%)
# Similarity:   551/875 (63.0%)
# Gaps:         148/875 (16.9%)
# Score: 1653.5
# 
#
#=======================================

BSNT_03225___      1 -----------------ATG--------ACAGGACA----TTAT------     15
                                      |||        |.||||.|    ||||      
RBAM_019590__      1 TTGAGAGATGCAGTTGGATGTGTAAGGAAAAGGAGAGCTTTTATGACCGA     50

BSNT_03225___     16 TCA-------AAAACGGAACATCAATATATATTGTTAACGTCTGAATCGG     58
                     |||       |||||.||..|.||.||||||..|.|.||.||     |||
RBAM_019590__     51 TCAATTTGATAAAACCGAGAAGCAGTATATAGAGCTTACTTC-----CGG     95

BSNT_03225___     59 CAT-----CGTTTGATCATTACAGCGTATACAGAGATCCGCAGCTT----     99
                     |||     .|||.||.||||.|||.|||||.|..||.|     |||    
RBAM_019590__     96 CATTCAGAGGTTCGAGCATTTCAGTGTATATACGGACC-----CTTTTTT    140

BSNT_03225___    100 -CCGCAAATTTTTTCTCATAACTTTGTTCAGCTCCATGATACGTTTCCAT    148
                      |||||.||||||||.|||||||||||||||||.||...|||.|||||.|
RBAM_019590__    141 GCCGCAGATTTTTTCGCATAACTTTGTTCAGCTGCACCGTACATTTCCGT    190

BSNT_03225___    149 TGGA---------GCGGTTACTTAACTTTTTACCCTCCGTACCAAAGC-T    188
                     |.||         ||.|||       |||||  |.|||||.|| ..|| |
RBAM_019590__    191 TAGACAAACTCCTGCCGTT-------TTTTT--CGTCCGTTCC-GGGCAT    230

BSNT_03225___    189 GCTTGATGCGAATTATCTCCATTTAAAAGCGTCGCCGCAGCATGTTTTTC    238
                     ||||.|.||.||||||.|.|||.|.||||||.|.|||.||||||..||||
RBAM_019590__    231 GCTTCAAGCCAATTATATTCATGTGAAAGCGGCTCCGGAGCATGCGTTTC    280

BSNT_03225___    239 CGCTCGGTTTGAAGCAGTCGCTTGTAAAAAGC--GGTTTTGTCGTCGAGG    286
                     ||||...|.||||.||..|.||.||  |||||  ||.|..||.||.||.|
RBAM_019590__    281 CGCTTCTTCTGAAACAAACTCTGGT--AAAGCAGGGCTGCGTAGTGGAAG    328

BSNT_03225___    287 ATGAGCTACTATATGACATGAAGCTTAGTGACTGGAA----GGG----GC    328
                     |||||||..|.|.||..|.|||        |||||||    |||    ||
RBAM_019590__    329 ATGAGCTGTTTTTTGCAAGGAA--------ACTGGAAAATGGGGACCTGC    370

BSNT_03225___    329 AGATGGGACATCCTTTAACCGCATGGGGGACGGCAAAAAGTCTTTGCGAC    378
                     ||...|||||.||..|.||.||.||||||||||.||||||.||...||||
RBAM_019590__    371 AGGCCGGACACCCGCTCACTGCTTGGGGGACGGAAAAAAGCCTCGCCGAC    420

BSNT_03225___    379 GGATCTTCTATTATGAAAATTTACGATTCCATTTATATTGGAGAAGCAAT    428
                     ||..|.|||||||||||.||.||.|||.||.||||.|||||.||.||...
RBAM_019590__    421 GGGGCGTCTATTATGAACATCTATGATGCCCTTTACATTGGCGAGGCGGC    470

BSNT_03225___    429 CGCTGAACAAAAATTAAAAAGAAAATATCCTTTCTATGAAGCA-GGTATA    477
                     .||.||||||||..|..|..|.|||||||||||.||| |||.| ||.|..
RBAM_019590__    471 GGCCGAACAAAAGCTTGAGCGGAAATATCCTTTGTAT-AAGGACGGAACG    519

BSNT_03225___    478 ATCATTCTTGTTGTTTGTTACAGCGA--CCAGGCACAGAAAG-TTCCCAT    524
                     ||.||.|||||.||.||.||||||||  ||..|||   ||.| ||||.||
RBAM_019590__    520 ATTATGCTTGTCGTGTGCTACAGCGACGCCTCGCA---AACGATTCCGAT    566

BSNT_03225___    525 TGGGTGCGGCGAGCTGTTTATCGATCATCA----AGAGAAAACGGCTAAA    570
                     .||.|||||.|||||.||    .||||.||    |||.|||||.||.|||
RBAM_019590__    567 CGGCTGCGGAGAGCTTTT----CATCAACAAAGCAGATAAAACCGCAAAA    612

BSNT_03225___    571 ATCGAAGAAGTGGCAATTTTAGATCAGTTTCAAAGGAAGGGCTACGGCAG    620
                     ||.||||||||.||||||.|.|||||.||.|||.|.||.||||||||   
RBAM_019590__    613 ATAGAAGAAGTCGCAATTCTGGATCAATTCCAACGAAAAGGCTACGG---    659

BSNT_03225___    621 TATC----TTAGTGAAAGAAATGCTGTCCAT-----CGCCAAATC---AC    658
                      |||    ||..||||.||   ||||   ||     ||.||||.|   ||
RBAM_019590__    660 -ATCGATATTGATGAATGA---GCTG---ATGGCGGCGGCAAAGCTGAAC    702

BSNT_03225___    659 TAGGAATGGAAGCAGCCTACTTAGTGGCTGCAAGCACTGACGGTGCAACT    708
                       ||.|||||..|.|..|||.|.|||.|..|..|.|..|||||||.||..
RBAM_019590__    703 --GGCATGGATACCGTATACCTTGTGACGTCCGGGATGGACGGTGTAAAC    750

BSNT_03225___    709 CAGTTTTACGAAAAGCTGACG--TTTAAAAAATATGAGCGGGTGCATACT    756
                     |..|||||.|||||.||  ||  ||.||||.||.|..|||.||||||||.
RBAM_019590__    751 CGCTTTTATGAAAAACT--CGGCTTCAAAAGATTTCGGCGCGTGCATACA    798

BSNT_03225___    757 GTATTTCATTATTTCCTTACATGA-    780
                     .|.|||||||||||.||||||| | 
RBAM_019590__    799 ATTTTTCATTATTTTCTTACAT-AG    822


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03225 and RBAM_019590

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
