Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03226 and RBAM_019600

See Amino acid alignment / Visit BSNT_03226 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:20
# Commandline: needle
#    -asequence dna-align/BSNT_03226___cgeD.1.9828.seq
#    -bsequence dna-align/RBAM_019600___cgeD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03226___cgeD-RBAM_019600___cgeD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03226___cgeD-RBAM_019600___cgeD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03226___cgeD
# 2: RBAM_019600___cgeD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1370
# Identity:     876/1370 (63.9%)
# Similarity:   876/1370 (63.9%)
# Gaps:         187/1370 (13.6%)
# Score: 2536.0
# 
#
#=======================================

BSNT_03226___      1 ATGGGAGAGAAAGTGTCTATTATTTTAACAAGTTACAACAAACCCGATTA     50
                     ||||.|.||||..|.||.|||||.|||||.||||||||||||||.|||..
RBAM_019600__      1 ATGGAAAAGAAGATCTCAATTATCTTAACGAGTTACAACAAACCGGATCT     50

BSNT_03226___     51 TTTGCAAAAAGCGATCGAAAGCGT---------GA--TACAGCAAACGCA     89
                     |.||.||.|.|||||.|||||.||         ||  |||||.||     
RBAM_019600__     51 TGTGAAACAGGCGATTGAAAGTGTTTTGCATCAGACCTACAGAAA-----     95

BSNT_03226___     90 TGATCTTTGGGAGCTTTTTATCATGGATGATCATTCGAATGCAGAAACAA    139
                           |||||||||.|||.|.||||||||||||||.||||.||||||..
RBAM_019600__     96 ------TTGGGAGCTGTTTGTAATGGATGATCATTCAAATGAAGAAACCT    139

BSNT_03226___    140 CTGCGGTGATTCA-CAAGTATCTCCACGACCGGCGCATTCAATATCATAA    188
                     |.||.|..| ||| .|.||||.|..|.||.|..|||||..|.|||.|.||
RBAM_019600__    140 CGGCTGCCA-TCAGTACGTATATAAAAGATCCTCGCATATATTATGACAA    188

BSNT_03226___    189 CAGTTTCGTGCATCCTGCAGATCGATTAAAAACAGCTCGTTATGCCACAT    238
                     ||||||..|..|||||||.||.||..|.||..|..|.||.||||||...|
RBAM_019600__    189 CAGTTTTATCAATCCTGCCGAACGGCTGAAGTCGACCCGGTATGCCGTTT    238

BSNT_03226___    239 TAATTAACAGTGCGCTCCCATTTGCAGACGGCGATTACATTTCCTATCTT    288
                     |.|||||...||||||..||...||..|.|||||.|||||..|.|||.|.
RBAM_019600__    239 TGATTAATGATGCGCTTTCACGGGCTAAAGGCGAATACATCACTTATTTG    288

BSNT_03226___    289 ACTGACGACACTGTTTATCATCCTGAGCGGCTGAGCCGTATGATGCAAGA    338
                     ||.||||||||.||.|.||||||.||..||||.|||||.|||..|.|||.
RBAM_019600__    289 ACAGACGACACCGTATTTCATCCGGATAGGCTCAGCCGCATGGCGGAAGC    338

BSNT_03226___    339 GTTT--TCACATAAGCCTGAAGCGCAG------GCGGTCTATTCAAAACA    380
                     |.||  ||| |||      .|||| ||      ||.||||||||.|..||
RBAM_019600__    339 GCTTAATCA-ATA------CAGCG-AGTTTGATGCCGTCTATTCCAGCCA    380

BSNT_03226___    381 AAAAGTTGTACATGTAAACGAAAGGGGAGAGGA-------AATCTCACAT    423
                     .||.||..|||||||||||     |||.|.|||       |||..|||  
RBAM_019600__    381 GAAGGTGATACATGTAAAC-----GGGCGCGGAACAGAACAATTCCAC--    423

BSNT_03226___    424 TTCTACAGAAATGCCAATGCAGTGCTTGATCAGGCCGCTTTTCAAGTTGA    473
                     |||||..|...|||..|.|..|||||.||||||||||||||||..|||||
RBAM_019600__    424 TTCTATCGTTTTGCTGAAGAGGTGCTAGATCAGGCCGCTTTTCTCGTTGA    473

BSNT_03226___    474 TCATTGCTCCGTTATGCATCGCCGTTCGTTACTTAATCTCATCCACCATA    523
                     |||.||.||.||.|||||.||..|.||.||.|||.|.|...|..|..|.|
RBAM_019600__    474 TCACTGTTCAGTGATGCACCGGAGATCATTGCTTGAGCGTGTGAAAGAGA    523

BSNT_03226___    524 AATTTGGAGGCTACTGGGATGATGATATGAAGCATTGGAATCATGGCGAC    573
                     |.||.||..|||..|||||.||.|||.|.|.||||||||||||.||.|||
RBAM_019600__    524 AGTTCGGCAGCTTTTGGGACGAAGATGTTATGCATTGGAATCACGGAGAC    573

BSNT_03226___    574 GCAATTTTTTGG-GCGAGACTCAACAACTTTACCCCATTTCTGCCGATAA    622
                     .|..|||||||| || ||..||||||..|||||..|||||||||||||||
RBAM_019600__    574 TCTGTTTTTTGGAGC-AGGATCAACACATTTACATCATTTCTGCCGATAA    622

BSNT_03226___    623 ATGAAGTATTAGACACAACCTATAAAACCCCAGATTCATTTCAAAATGCA    672
                     |.|||||.||.||.||.|||||||||||.||..|.||||||||.||..|.
RBAM_019600__    623 AAGAAGTGTTGGATACGACCTATAAAACACCCCACTCATTTCAGAACACG    672

BSNT_03226___    673 T----ATCGGTT---TCTGCCCGCCGATTTGATTGACGGCTCTTTTGTAA    715
                     |    ||||.||   ||||.||       ||||.|||||.||.|||||||
RBAM_019600__    673 TATCAATCGCTTCCGTCTGTCC-------TGATCGACGGATCCTTTGTAA    715

BSNT_03226___    716 AAGGTTCAGATCA-AAATGTGTATTTTTTTGATCAGGGTG---------T    755
                     |.||..|.||||| |||   ||||       |||||..||         .
RBAM_019600__    716 AGGGGACGGATCAGAAA---GTAT-------ATCAGCTTGACCGAAATAA    755

BSNT_03226___    756 AAGGCATCCTGTTGGAGAAAAG-----TGGGGTTTTTTGTATCTAAATCG    800
                     ||||.|.|||||     |||.|     |||..|...||.|||..|...||
RBAM_019600__    756 AAGGAAGCCTGT-----AAACGAGCGCTGGCATACGTTATATGAAGGGCG    800

BSNT_03226___    801 GACTGTCGCTGTTCCAGACCCATATTTATTCCAATAT-AGGATTGGCAAA    849
                     .||.||||...||||.||.||.|.||||||.|||||| ||||...|    
RBAM_019600__    801 AACCGTCGTCATTCCGGATCCGTTTTTATTTCAATATGAGGAAGAG----    846

BSNT_03226___    850 ATTTTAAAC---------ATTCCGAATTATATTT----TAGTAAAGGA--    884
                           |||         |||||||||    |||    |.||.|.|||  
RBAM_019600__    847 ------AACTCCGTCAGTATTCCGAAT----TTTCAGCTCGTCAGGGATC    886

BSNT_03226___    885 AGCTGACCATCCTGCAATATTTTATATCGAAGCTGGAAAAAAAAGGCGAA    934
                     ||.|     ||.|| ..|||||||||  ||||..||..|.|||||||   
RBAM_019600__    887 AGTT-----TCATG-TTTATTTTATA--GAAGACGGGGAGAAAAGGC---    925

BSNT_03226___    935 TTGTGGACCAGTATGCG--TTTCAATTTTATCAATTTCAAAGAAAAGACA    982
                     |.||.||.|| || |||  ||||..|||||.|.||||     |||.|.||
RBAM_019600__    926 TGGTTGATCA-TA-GCGCATTTCGCTTTTACCGATTT-----AAACGGCA    968

BSNT_03226___    983 TAGTGACA-------ATTGGAA-AAGAAGAGATGGAGACGCTTCCGGAAG   1024
                        |||||       |||.||| ..||.||.||..|..||||||||||.|
RBAM_019600__    969 ---TGACATCCCGGCATTAGAACGGGACGAAATACAAGCGCTTCCGGACG   1015

BSNT_03226___   1025 GGCCGCCGATTA-CGTGGAAACGATC----TGAATTGATCAAAAATCCGC   1069
                     |.||||||||.| |..||..|| |||    ||.|||    .||.|||.||
RBAM_019600__   1016 GTCCGCCGATCAGCAGGGGGAC-ATCGGGGTGTATT----CAACATCTGC   1060

BSNT_03226___   1070 CTGGCCGACGTCTGTTTTTCATCGAACGCGAGCCGTTTT-TGTTTCT---   1115
                     |.||..||...||||||..|||.||||   ||...|||| |||||.|   
RBAM_019600__   1061 CCGGGAGAATGCTGTTTCGCATTGAAC---AGGAATTTTATGTTTATTTG   1107

BSNT_03226___   1116 AAACGGCGTCTTTCACCCGATTAGTGAACAAGTAACAAGGAAGTTTTTTT   1165
                     |.| ||.||..|.||.|||||.|||.|..|.|||.|  |.||...|||||
RBAM_019600__   1108 AGA-GGGGTTCTCCATCCGATCAGTCATGACGTAGC--GAAACGCTTTTT   1154

BSNT_03226___   1166 TAC--ATCAAAAGCCAATCTCCGCTT-CTTTCCGAAATATTCAGCAATTT   1212
                     |.|  ||||.|||.|.||..||..|| |||||.|.|| |||.|.|||||.
RBAM_019600__   1155 TGCGAATCAGAAGGCGATACCCATTTCCTTTCAGCAA-ATTAAACAATTA   1203

BSNT_03226___   1213 CCAATTGGAAAGCCGTTTTATCCGGTGTACGATGAGATTATAAAGAAAT-   1261
                     ||||||||||.||||||.|||||||||||||||||.||||| .|||||| 
RBAM_019600__   1204 CCAATTGGAATGCCGTTCTATCCGGTGTACGATGAAATTAT-GAGAAATC   1252

BSNT_03226___   1262 TGAATATTGCAACAGAGTAA   1281
                     |.|||||..|||.||..|.|
RBAM_019600__   1253 TCAATATAACAAAAGGTTGA   1272


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