Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03229 and RBAM_019620

See Amino acid alignment / Visit BSNT_03229 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:20
# Commandline: needle
#    -asequence dna-align/BSNT_03229___cgeA.1.9828.seq
#    -bsequence dna-align/RBAM_019620___cgeA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03229___cgeA-RBAM_019620___cgeA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03229___cgeA-RBAM_019620___cgeA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03229___cgeA
# 2: RBAM_019620___cgeA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 434
# Identity:     240/434 (55.3%)
# Similarity:   240/434 (55.3%)
# Gaps:         124/434 (28.6%)
# Score: 789.5
# 
#
#=======================================

BSNT_03229___      0 --------------------------------------------------      0
                                                                       
RBAM_019620__      1 ATGAGCGAAGATCGTTTGGAGCTTAAAAAGAACTTATTGAAAACTCTTTT     50

BSNT_03229___      1 -----------------------------------------ATG-----G      4
                                                              |||     |
RBAM_019620__     51 AGCCCCTGTATTTGACAACAGCGCTTTATCTGGCGGTACAGATGGAGGAG    100

BSNT_03229___      5 ATA--GT-------AACCTTAAAGACTTGCTTGAAGCTGCCATCGAT-CA     44
                     |||  ||       |.|.|.|||||.||..|.|||||.||.||.||| ||
RBAM_019620__    101 ATAACGTGAAAAACAGCGTAAAAGAATTATTGGAAGCGGCAATTGATGCA    150

BSNT_03229___     45 AAGAGTAGATGAA-----AGTG--AGATGG--TTACGGCAGAATCTCTTT     85
                     || ||||||||||     .|||  |||..|  |.|..|||.|||||.|.|
RBAM_019620__    151 AA-AGTAGATGAAGCAGCGGTGAAAGACAGTCTCAGCGCACAATCTGTAT    199

BSNT_03229___     86 TAG--ACC----CTTCCCTTCCGGCAAGATGGATTTTTGCCAGAGTTACG    129
                     |.|  |.|    .|||..|..||||.||||||||||||||.|||.||..|
RBAM_019620__    200 TGGGAAGCGGTATTTCATTAGCGGCGAGATGGATTTTTGCAAGAATTCAG    249

BSNT_03229___    130 CCAGGCAC-GACAATCAGCATTGTAACCGATTCGGGAGACATGATCGGGC    178
                     ||.||||| |.| |||||||||||.|..|||||.||||||||||||||.|
RBAM_019620__    250 CCCGGCACTGTC-ATCAGCATTGTGATGGATTCAGGAGACATGATCGGCC    298

BSNT_03229___    179 CGGTTGTCTTCGTTGCTTTCGATCAGGTTCACGGGATCGTATTTGTAACA    228
                     |||||...||.|||||.||.||..|..|||||||.|||||.|||||.||.
RBAM_019620__    299 CGGTTCAATTTGTTGCCTTTGACGAAATTCACGGAATCGTTTTTGTTACG    348

BSNT_03229___    229 CAGGAAAGCTCCGTCACTCCAGCAGGCCAAGCTACAACATTAATTGATGT    278
                     |||||||..|||||.||.||.||||||...|||||||||||..||||.||
RBAM_019620__    349 CAGGAAAATTCCGTTACACCGGCAGGCTCTGCTACAACATTGCTTGACGT    398

BSNT_03229___    279 AGACAAAGTAGAAAGCGTTACGTTCTTTTCATAA    312
                     .||||||||.|||||.||.||||||..|||.|||
RBAM_019620__    399 CGACAAAGTTGAAAGTGTCACGTTCACTTCGTAA    432


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