Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03094 and RBAM_019810

See Amino acid alignment / Visit BSNT_03094 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:57
# Commandline: needle
#    -asequence dna-align/BSNT_03094___yokK.1.9828.seq
#    -bsequence dna-align/RBAM_019810___yokK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03094___yokK-RBAM_019810___yokK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03094___yokK-RBAM_019810___yokK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03094___yokK
# 2: RBAM_019810___yokK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 685
# Identity:     333/685 (48.6%)
# Similarity:   333/685 (48.6%)
# Gaps:         254/685 (37.1%)
# Score: 709.0
# 
#
#=======================================

BSNT_03094___      1 ATGAGCTTCAA--TAATGTCAAACAAAAGTTGAAAGAGT--TTTTAATTG     46
                     |||.||||..|  |||  ||||..||||    ||.||||  .||||||| 
RBAM_019810__      1 ATGGGCTTACAGGTAA--TCAAGAAAAA----AATGAGTGAATTTAATT-     43

BSNT_03094___     47 ATGCAAAAACAGATCCCAGAATCAATAAAAATGAACA-----ACTCA--A     89
                              .||||...|||.|..||||    |||||     .||||  |
RBAM_019810__     44 ---------TAGATATAAGACTTGATAA----GAACATAAATTCTCATCA     80

BSNT_03094___     90 AGAAATTGAAA----TGAACATAGGAAAACAATTACCTTC----------    125
                     ||...||.|||    ||     ||||..|.|||| |.|||          
RBAM_019810__     81 AGTTCTTAAAAAGTTTG-----AGGACGAAAATT-CTTTCGACATATCAG    124

BSNT_03094___    126 -TGATTATAAGGACTTTTTGAAGGAATATGGCG---GCTGTTATTTAGAA    171
                      |||||||||.||.|||.|.||...|||.||.|   ||||       ||.
RBAM_019810__    125 ATGATTATAAAGAGTTTCTCAATTTATACGGGGAATGCTG-------GAT    167

BSNT_03094___    172 AGTAAAAAAACATCA-GATGAGATTGAGTATGACGTTTGCTATAAACCTA    220
                     ||            | ||.||.|.||.||.|    |||.||.|     |.
RBAM_019810__    168 AG------------AGGAAGATAATGTGTTT----TTTCCTGT-----TT    196

BSNT_03094___    221 TAGAGAAAGATCCTTGGATGGGCAAGGGCGATGATACAC---AAT----T    263
                     |||||.|..||||    |...|||        |||| ||   |||    .
RBAM_019810__    197 TAGAGGACAATCC----ACTAGCA--------GATA-ACGGTAATCTCCG    233

BSNT_03094___    264 GTTAGAAGGTTTTTATGGTTTAGCGAACGATCATGACAGTCTTCAGAAAG    313
                     |||.|.|..|||.|                     ||.|||||.|.||  
RBAM_019810__    234 GTTGGGATATTTCT---------------------ACGGTCTTAATAA--    260

BSNT_03094___    314 CAATCGATAC--ATATTCT-------------GATCGCTTTCCTAG---A    345
                     |||| |||.|  |||||.|             |||  |||||  ||   |
RBAM_019810__    261 CAAT-GATGCTAATATTATCAAATTAAAAGAGGAT--CTTTC--AGAACA    305

BSNT_03094___    346 AAT----------ATTATTCCTATCGCAAGCTCTGCAGGTG-----GGA-    379
                     |||          |||||.||.||.|      |||..||||     ||| 
RBAM_019810__    306 AATGCCGGACTGGATTATACCGATTG------CTGATGGTGACGGAGGAG    349

BSNT_03094___    380 ATGAAATATGTATGGATATCGATA-----------ATGGAAAG-ATATTG    417
                     ||.||||.|||.|.|.|.| ||.|           |.|||||| .|||  
RBAM_019810__    350 ATCAAATTTGTCTTGGTGT-GAAAGGGGAGGCAGCAGGGAAAGTTTAT--    396

BSNT_03094___    418 TTTTGGGATCATGAATTAAGTCATCCCGAC----------AAAGACTTTT    457
                     |||||||||||||||||          |||          ||||||...|
RBAM_019810__    397 TTTTGGGATCATGAATT----------GACAAATGGAGTAAAAGACACGT    436

BSNT_03094___    458 TCTTAATTGCCAATTCGTTTGAGGAGTTTGTCTTCA----------GTTT    497
                     |.||..|.||.|||||.||      .|.||.|||||          ||||
RBAM_019810__    437 TTTTGGTGGCAAATTCTTT------CTCTGACTTCATTCAAAGTCTGTTT    480

BSNT_03094___    498 AGTTGATGA---ACCAATTGAAGCTGATAAAGAAGATGATGGAATTCTGT    544
                     | |.||.||   |.||..|||.|..|||   |||||.|||||.|||.|.|
RBAM_019810__    481 A-TAGAAGAGACAGCAGATGAGGACGAT---GAAGACGATGGTATTTTAT    526

BSNT_03094___    545 ATATTGA-----ATAA-------------------    555
                     .||||||     ||.|                   
RBAM_019810__    527 CTATTGAGCTAGATGATGATTTATTAAACAGTTAA    561


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