Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03243 and RBAM_019900

See Amino acid alignment / Visit BSNT_03243 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:21
# Commandline: needle
#    -asequence dna-align/BSNT_03243___ypmQ.1.9828.seq
#    -bsequence dna-align/RBAM_019900___ypmQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03243___ypmQ-RBAM_019900___ypmQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03243___ypmQ-RBAM_019900___ypmQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03243___ypmQ
# 2: RBAM_019900___ypmQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 670
# Identity:     437/670 (65.2%)
# Similarity:   437/670 (65.2%)
# Gaps:          95/670 (14.2%)
# Score: 1473.5
# 
#
#=======================================

BSNT_03243___      1 ---ATGAAGG-----------TTAT-CAAGGGGTTAACGG----------     25
                        |||||.|           |||| ||.||||..||.||          
RBAM_019900__      1 ATGATGAATGCTGTAAGCGTTTTATCCATGGGGGGAATGGAAATGAAAAA     50

BSNT_03243___     26 ---------CTGGGCTG--ATTTTTCTGTTT-------TTGTGTGCATGC     57
                              ||..||||  .|.||| |||||       |||||.||.|||
RBAM_019900__     51 AATGAAAATCTTCGCTGCCGTCTTT-TGTTTGCTGCTCTTGTGCGCCTGC     99

BSNT_03243___     58 -GGAGGACAGCAGATTAAAAATCCGCTCAATTACGAGGTGGAGCCTTTTA    106
                      ||.|||.|.| |||.|||.|.|||||.||.||..||.|.||.||.|||.
RBAM_019900__    100 GGGGGGAAAAC-GATAAAAGACCCGCTGAACTATCAGATTGAACCGTTTT    148

BSNT_03243___    107 CATTTCAAAACCAAGACGGCAAGAAC-GTTTCTTTAGAGAGTTTAAAAGG    155
                     |||..||.|||||||||||.|| ||| ||.||..|..|.||..|.||.||
RBAM_019900__    149 CATACCAGAACCAAGACGGGAA-AACAGTGTCACTGAATAGCCTGAAGGG    197

BSNT_03243___    156 AGAAGTATGGCTGGCGGATTTTATTTTTACCAATTGTGAAACTATATGTC    205
                     ..|.||.|||.|.||.||.|||||.|||||.||||||.|.||..|.||||
RBAM_019900__    198 GCATGTCTGGATTGCCGACTTTATGTTTACAAATTGTAATACGGTCTGTC    247

BSNT_03243___    206 CGCCAATGACCGCTCATATGACCGATCTGCAAAAAAAACTGAAAGCCGAA    255
                     ||||.|||||.||.||.||||||||.|||||||||||||||||.||.||.
RBAM_019900__    248 CGCCGATGACGGCCCACATGACCGAACTGCAAAAAAAACTGAAGGCTGAG    297

BSNT_03243___    256 AATATAGATGTCCGCATCATATCATTTAGTGTTGATCCAGAAAACGATAA    305
                     |||.|.||.||.||.||..|.||.||.|||||.|||||.|||||.||||.
RBAM_019900__    298 AATCTGGACGTGCGGATTGTGTCGTTCAGTGTAGATCCTGAAAAGGATAC    347

BSNT_03243___    306 GCCGAAACAGCTGAAGAAATTTGCCGCAAATTATCCATTATCTTTTGATA    355
                     |||||||||||||||...||||||.||.||.||.||..|.||..||...|
RBAM_019900__    348 GCCGAAACAGCTGAAAGCATTTGCTGCCAAATACCCGCTCTCACTTCGCA    397

BSNT_03243___    356 ACTGGGATTTTCTCACGGGATACAGCCAGAGTGAGATTGAGGAGTTCGCA    405
                     |||||||||||||.||.||.||||||||.|..||.|||||.||.||.||.
RBAM_019900__    398 ACTGGGATTTTCTGACCGGTTACAGCCAAAAGGACATTGAAGATTTTGCG    447

BSNT_03243___    406 CTTAAGAGCTTTAAAGCGATCGTAAAGAAGCCGGAGGGAGAGGACCAAGT    455
                     ||.||.|||||||||||.|||||.||.||||||||||||||||||||.||
RBAM_019900__    448 CTGAACAGCTTTAAAGCAATCGTCAAAAAGCCGGAGGGAGAGGACCAGGT    497

BSNT_03243___    456 GATTCATCAATCTTCTTTTTGGTTAGTAGGCCCGAACGGCAAGGTGCTGA    505
                     .||.||||||.|.|||||||..|||||.||.||..|.|||||||||||.|
RBAM_019900__    498 CATACATCAAACCTCTTTTTATTTAGTCGGACCTGATGGCAAGGTGCTTA    547

BSNT_03243___    506 AAGATTATAATGGAGTG--GAAAATACACCGTACGATGAAATTATCGCCG    553
                     ||||||||.|.||.|||  ||||.|  .|||||.|||||.||..||.|.|
RBAM_019900__    548 AAGATTATGACGGCGTGCAGAAAGT--TCCGTATGATGACATCCTCTCAG    595

BSNT_03243___    554 ATGTAAAATCAGC--AGGCGCACTCAAGGAAGTTAGAAGACTAGGCATTT    601
                     ||||.|.|.|.||  |||.|  ||||||.||                   
RBAM_019900__    596 ATGTCAGAGCGGCTGAGGAG--CTCAAGTAA-------------------    624

BSNT_03243___    602 GCAAATCTTCTAAAACATGA    621
                                         
RBAM_019900__    624 --------------------    624


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