Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03246 and RBAM_019920

See Amino acid alignment / Visit BSNT_03246 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:21
# Commandline: needle
#    -asequence dna-align/BSNT_03246___ilvA.1.9828.seq
#    -bsequence dna-align/RBAM_019920___ilvA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03246___ilvA-RBAM_019920___ilvA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03246___ilvA-RBAM_019920___ilvA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03246___ilvA
# 2: RBAM_019920___ilvA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1278
# Identity:    1017/1278 (79.6%)
# Similarity:  1017/1278 (79.6%)
# Gaps:          18/1278 ( 1.4%)
# Score: 4037.5
# 
#
#=======================================

BSNT_03246___      1 ATGAAACCGTTGCTTAAAGAAAACTCTCTCATCCAAGTGAAAGACATTTT     50
                     |||||||||||||||||||||.|||||||||||||.||.|||||||||||
RBAM_019920__      1 ATGAAACCGTTGCTTAAAGAAGACTCTCTCATCCAGGTAAAAGACATTTT     50

BSNT_03246___     51 GAAGGCTCACCAAAACGTAAAGGACGTTGTCATTCACACACCTTTGCAGA    100
                     .||.||.||||||||.||||||||||||||.||.||.||.||||||||||
RBAM_019920__     51 AAAAGCGCACCAAAATGTAAAGGACGTTGTGATACATACGCCTTTGCAGA    100

BSNT_03246___    101 GGAATGACAGACTTTCTGAGAGATATGAATGCAATATCTATTTAAAACGC    150
                     ||||||||||||||||||||||.||||..||||||||||||||.|||.|.
RBAM_019920__    101 GGAATGACAGACTTTCTGAGAGGTATGGCTGCAATATCTATTTGAAAAGA    150

BSNT_03246___    151 GAAGACTTGCAAGTTGTCAGATCTTTTAAGCTCAGAGGGGCTTATCATAA    200
                     ||||||.||||.||.||||||||.|||||||||||||||||||||.||||
RBAM_019920__    151 GAAGACCTGCAGGTGGTCAGATCATTTAAGCTCAGAGGGGCTTATAATAA    200

BSNT_03246___    201 AATGAAACAGCTTTCCAGCGAGCAGACAGAGAACGGAGTTGTGTGTGCAA    250
                     |||||..|||||.||.|..||||||||.||.||||||.||||.||.||||
RBAM_019920__    201 AATGAGGCAGCTCTCAAAAGAGCAGACTGAAAACGGAATTGTATGCGCAA    250

BSNT_03246___    251 GTGCCGGAAACCACGCTCAAGGTGTGGCATTTTCGTGTAAACATCTTGGC    300
                     ||||.||||||||.||.||.||.||.||.|||||.||.|||||.||.|||
RBAM_019920__    251 GTGCGGGAAACCATGCGCAGGGGGTTGCGTTTTCATGCAAACACCTCGGC    300

BSNT_03246___    301 ATTCACGGAAAAATTTTTATGCCGTCTACTACACCGAGACAAAAAGTATC    350
                     ||||||||.||.||||||||||||||.||.|||||||||||.||||||||
RBAM_019920__    301 ATTCACGGCAAGATTTTTATGCCGTCAACCACACCGAGACAGAAAGTATC    350

BSNT_03246___    351 TCAAGTTGAACTATTCGGAAAAGGATTTATCGACATTATTTTGACAGGCG    400
                     .|||||.|||||.||||||||||.||||.|.||.||.||.|||||.||.|
RBAM_019920__    351 CCAAGTGGAACTGTTCGGAAAAGAATTTGTTGAAATCATATTGACGGGTG    400

BSNT_03246___    401 ATACGTTTGACGACGCGTATAAAAGCGCTGCTGAATGCTGTGAGGCGGAA    450
                     |.||.||.||.||.||||||||.||..||||.|||||||||||....|||
RBAM_019920__    401 ACACTTTCGATGATGCGTATAAGAGTTCTGCGGAATGCTGTGAAAAAGAA    450

BSNT_03246___    451 TCTCGGACGTTTATCCATCCGTTCGATGATCCGGATGTGATGGCCGGACA    500
                     ...||.||||||||.||||||||.||.|||||.|||||.|||||||||||
RBAM_019920__    451 AACCGCACGTTTATTCATCCGTTTGACGATCCCGATGTCATGGCCGGACA    500

BSNT_03246___    501 GGGAAC-GCTCGCAGTCGAGATTTTAAACGACATTGATACAGAACCGCAT    549
                     |||||| ||| ||..||||.||||||||.||||||||....|||||||||
RBAM_019920__    501 GGGAACGGCT-GCCATCGAAATTTTAAATGACATTGACGTTGAACCGCAT    549

BSNT_03246___    550 TTTCTTTTTGCAAGTGTCGGTGGCGGCGGCCTTCTCTCTGGGGTAGGTAC    599
                     ||||||||||||||.||.||.||.||.||.||.||.||.|||.|.||.||
RBAM_019920__    550 TTTCTTTTTGCAAGCGTAGGGGGAGGTGGACTCCTGTCCGGGCTCGGCAC    599

BSNT_03246___    600 ATATTTGAAAAACGTGTCTCCTGATACAAAGGTAATTGCTGTTGAGCCGG    649
                     .||..||||||||.|.||.||.||||||||..|.||.||.||.||||||.
RBAM_019920__    600 GTACATGAAAAACATCTCGCCGGATACAAAAATCATAGCGGTAGAGCCGA    649

BSNT_03246___    650 CGGGAGCGGCATCCTACTTTGAATCAAACAAAGCTGGGCATGTCGTCACA    699
                     .|||.||.||.|||||.||||||||.||.|||||.||.||.||.||...|
RBAM_019920__    650 AGGGCGCAGCCTCCTATTTTGAATCGAAAAAAGCCGGACAAGTGGTTGAA    699

BSNT_03246___    700 CTTGATAAAATTGATAAGTTTGTAGATGGTGCGGCTGTTAAAAAAATTGG    749
                     |||||.|||||.|||||.|||||.|||||.|||||.||.||||||||.||
RBAM_019920__    700 CTTGAGAAAATCGATAAATTTGTCGATGGGGCGGCCGTAAAAAAAATCGG    749

BSNT_03246___    750 CGAAGAAACCTTCCGGACGCTGGAAACTGTCGTTGATGACATTCTCCTTG    799
                     ||..||||||||.|..|||||.|||||.|||||.||||||.||.|.||||
RBAM_019920__    750 CGCGGAAACCTTTCAAACGCTCGAAACCGTCGTCGATGACGTTGTGCTTG    799

BSNT_03246___    800 TGCCTGAAGGAAAAGTATGTA-CATCCATTCTTGAATTATATAACGAATG    848
                     |.||.|||||||||||.||.| || |.|||||.|||||||||||..||||
RBAM_019920__    800 TCCCGGAAGGAAAAGTGTGCAGCA-CGATTCTCGAATTATATAATCAATG    848

BSNT_03246___    849 TGCGGTTGTTGCTGAACCGGCTGGAGCTCTTTCTGTCGCAGCGCTTGATT    898
                     .||..|.||.||.||.|||||.||.||..|.||.||..||||.|||||||
RBAM_019920__    849 CGCCATCGTAGCGGAGCCGGCGGGGGCATTGTCCGTGTCAGCACTTGATT    898

BSNT_03246___    899 TGTACAAGGATGAAATTAAAGGGAAAAACGTGGTGTGTGTGGTAAGCGGG    948
                     ||||.|||||.||.|||||||||||||||||..|.||..||||.|||||.
RBAM_019920__    899 TGTATAAGGAAGAGATTAAAGGGAAAAACGTCATCTGCATGGTCAGCGGA    948

BSNT_03246___    949 GGCAATAACGATATCGGAAGAATGCAGGAAATGAAGGAGCGTTCCTTGAT    998
                     ||.||||||||.|||||.|||||||||||.|||||||||||.|||.||||
RBAM_019920__    949 GGGAATAACGACATCGGCAGAATGCAGGAGATGAAGGAGCGCTCCATGAT    998

BSNT_03246___    999 TTTTGAAGGTCTTCAGCATTATTTTATCGTCAACTTTCCGCAAAGAGCGG   1048
                     ||.|||.||.||.|||||||||||||||||.||.||.||||||||.||||
RBAM_019920__    999 TTATGAGGGGCTGCAGCATTATTTTATCGTTAATTTCCCGCAAAGGGCGG   1048

BSNT_03246___   1049 GGGCGCTCCGCGAATTTCTTGACGAAGTCCTCGGACCGAATGATGACATT   1098
                     |.|||||.|||||||..||.||.|||||.||.||.||..||||||||||.
RBAM_019920__   1049 GAGCGCTTCGCGAATACCTAGATGAAGTGCTTGGGCCTGATGATGACATC   1098

BSNT_03246___   1099 ACAAGGTTTGAATATACGAAGAAAAATAATAAAAGCAATGGACCTGCTCT   1148
                     ||..||||||||||.|||||.||||||||.|||||||..||.||.||..|
RBAM_019920__   1099 ACCCGGTTTGAATACACGAAAAAAAATAACAAAAGCAGCGGCCCCGCATT   1148

BSNT_03246___   1149 TGTCGGCATCGAGCT---GCA----GAACAAAGCCGATTATGGGCCGCTG   1191
                     .||||||||.|||||   |||    |||       |||||.||..||||.
RBAM_019920__   1149 GGTCGGCATTGAGCTTAAGCATCGGGAA-------GATTACGGCGCGCTC   1191

BSNT_03246___   1192 ATTGAACGGATGAACAAAAAACCGTTTCATTATGTAGAGGTGAACAAGGA   1241
                     ||||..||||||||..|||||...||||||||.|||||||||||.||.||
RBAM_019920__   1192 ATTGCCCGGATGAATCAAAAAGGATTTCATTACGTAGAGGTGAATAAAGA   1241

BSNT_03246___   1242 TGAGGACTTGTTCCATTTGCTAATCTAA   1269
                     |.||||..|||||||..||.||||||.|
RBAM_019920__   1242 TCAGGATCTGTTCCACCTGTTAATCTGA   1269


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