Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02921 and RBAM_019970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:47
# Commandline: needle
# -asequence dna-align/BSNT_02921___thyA.1.9828.seq
# -bsequence dna-align/RBAM_019970___thyA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02921___thyA-RBAM_019970___thyA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02921___thyA-RBAM_019970___thyA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02921___thyA
# 2: RBAM_019970___thyA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1010
# Identity: 473/1010 (46.8%)
# Similarity: 473/1010 (46.8%)
# Gaps: 385/1010 (38.1%)
# Score: 839.5
#
#
#=======================================
BSNT_02921___ 1 ATGACGCAATTCGATAAACAATACAAT------TCA---ATTATAAA--G 39
||||..|||| |||||.|.| | ||| .|||.||| |
RBAM_019970__ 1 ATGAAACAAT---ATAAAGATT----TGTGCCGTCATGTGTTAGAAAACG 43
BSNT_02921___ 40 GATATTATCAATAATGGAATCTCAGACGAAGAGTTTGATGTA--AGAACC 87
||.| .||.||.|| |||| .||| .||||
RBAM_019970__ 44 GAGA----AAAAAAAGG------AGAC-----------CGTACGGGAAC- 71
BSNT_02921___ 88 AAGTGGG-AC--TCAGATGGAACAC---CGGCACATACTCTAAGTGTAAT 131
||| || |||| ||| |||| |||
RBAM_019970__ 72 ----GGGTACGATCAG------CACGTTCGGC---TAC------------ 96
BSNT_02921___ 132 GAGTAAGCAAATGAGATTCGACAAC--TCAG--AGGTT--CCGATTTTAA 175
||||||.|.|| .||| |||| ||||| |||||..|.|
RBAM_019970__ 97 -------CAAATGCGGTT---TAACCTTCAGGAAGGTTTCCCGATGCTTA 136
BSNT_02921___ 176 CGACAAAAAAGGTTGCCTGGAAAACAGCCA--TTAAA------------G 211
||||.||||||.| ||| ||||| |
RBAM_019970__ 137 CGACGAAAAAGCT--------------CCATTTTAAATCCATCGCGCATG 172
BSNT_02921___ 212 AGTTGCTCTGGATTTGGCAGCTGAAA------TCTAATG------ATGTT 249
||.||||.|||.||| |.||| .|.|||| |..||
RBAM_019970__ 173 AGCTGCTTTGGTTTT------TAAAAGGAGATACGAATGTCCGCTACCTT 216
BSNT_02921___ 250 AATGATTTAAACAAGATGGGCGTACATATTTGGGATCAGTGGAAACAAGA 299
.|.|| |||| ||.||.|..||.|||.|..|.|||....|.||
RBAM_019970__ 217 CAGGA---AAAC------GGAGTCCGCATCTGGAACGAATGGGCGGATGA 257
BSNT_02921___ 300 AGACG--GCACCATCGGACATGCATATGGATTTCA---GC-----TGGGG 339
|.||| |.|| ||||||..|..||.||.|.||| || |||.|
RBAM_019970__ 258 AAACGGAGAAC--TCGGACCGGTTTACGGTTCTCAATGGCGTTCATGGCG 305
BSNT_02921___ 340 AAGAAAAACAGAAGTCTAAACGGAGAAAAAGTGGATCAGGTAGACTATCT 389
..| ||..| ||||.||.|...|.||||| .||||
RBAM_019970__ 306 CGG------AGCGG-----ACGGCGAGACCATTGATCA-------AATCT 337
BSNT_02921___ 390 TC-------TTCATCAATTGAAGAACAACCCGTCTTCACGCAGACATATT 432
.| |||||.|..|.||||..||||||..||| |||||.| ||
RBAM_019970__ 338 CCCGACTGATTCATGACATCAAGACAAACCCGAATTC---CAGACGT-TT 383
BSNT_02921___ 433 A--------------CAATG-CTGTGGAATCCTGATGATTTAGACGCAAT 467
| .|||| |.|.|.||| ||||.||.| |.|||
RBAM_019970__ 384 AATCGTCAGCGCCTGGAATGTCGGCGAAAT--TGATCATAT-GGCGC--- 427
BSNT_02921___ 468 GT----CCTTAACGCCA-TG--TGTATACGAGACACAATGGTACGTTAAA 510
| |||| |||| || |||.| ||.|..||.||
RBAM_019970__ 428 -TTCCGCCTT---GCCACTGCCTGTTT--------CAGTTTTATGT---- 461
BSNT_02921___ 511 C----ATGGGAAACTC------CACCTTGAGGTAAGAGCACGGAGCAATG 550
| |.||.|||||| ||.||| ||..|||.|..||| .|
RBAM_019970__ 462 CGCGGACGGAAAACTCTCGTGTCAGCTT----TATCAGCGCTCAGC--GG 505
BSNT_02921___ 551 ATAT-------GGCATTAGGAAATCCCTTCAATGTATTCCAGT------- 586
||.| |||.| .||.||.|| ||||.| ||
RBAM_019970__ 506 ATGTCTTTCTCGGCGT-------GCCGTTTAA--TATTGC-GTCTTATGC 545
BSNT_02921___ 587 -------ACAATGTGTTGCAGCGCATGATTGCTCAAGTGACTGGTTATGA 629
|||||| |||||.||.||.|||||.||...|||
RBAM_019970__ 546 GCTTTTAACAATG-----------ATGATCGCGCATGTGACGGGGCTTGA 584
BSNT_02921___ 630 GCTTGGTGAATATATCTTTA-ACATTGGGGATTGCCATGTGTACACACGT 678
.|..||||| .|.|.||.| |||||.|| |.||||
RBAM_019970__ 585 ACCGGGTGA--GTTTGTTCATACATTCGG---------------AGACGT 617
BSNT_02921___ 679 CATATAGACAATTTGAAAATTCAAATGGA--AAGAGAACAGTTTGAAGCA 726
| .|||.||...|||..||..|||| |.|.||| ||| |||
RBAM_019970__ 618 C-----CACATTTACCAAAACCATGTGGAGCAGGTGAA---TTT---GCA 656
BSNT_02921___ 727 CCTGAACTATGGAT-------CAATCCTGAA------------GTGAAA- 756
.||| ||.|.|||| |..|.|.||| |.||||
RBAM_019970__ 657 GCTG-ACAAGGGATGTCCGTCCGCTGCCGAAACTGCGGTTTGCGCGAAAT 705
BSNT_02921___ 757 ---GATT---TTTATAACTTTACCATTGATGA-TTTCAAGTTAATCA--- 796
|||| |||.|.|.|||||..||||.|| ||| ||||
RBAM_019970__ 706 GTTGATTCTATTTTTGATTTTACGTTTGAAGACTTT-------ATCATTG 748
BSNT_02921___ 797 ---ACTATAA---ACATGGGGACA-------AGCTTTTA---TTTGAGGT 830
|.|||.| .|||..|.||| ||||.|.| |.|||
RBAM_019970__ 749 AGGATTATGACCCGCATCCGCACATAAAAGGAGCTGTCAGCGTATGA--- 795
BSNT_02921___ 831 AGCGGTTTAA 840
RBAM_019970__ 795 ---------- 795
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