Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03264 and RBAM_020030
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:23
# Commandline: needle
# -asequence dna-align/BSNT_03264___ypgQ.1.9828.seq
# -bsequence dna-align/RBAM_020030___ypgQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03264___ypgQ-RBAM_020030___ypgQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03264___ypgQ-RBAM_020030___ypgQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03264___ypgQ
# 2: RBAM_020030___ypgQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 717
# Identity: 408/717 (56.9%)
# Similarity: 408/717 (56.9%)
# Gaps: 171/717 (23.8%)
# Score: 1016.5
#
#
#=======================================
BSNT_03264___ 1 ATGAAGGAATTGAAGCAGGCAGAGC------AAA---TCAGGACATGGGT 41
.||||.||| || ||||| ||| |||||| ||.||.
RBAM_020030__ 1 GTGAACGAA---AA------AGAGCAGCTGGAAAGCGTCAGGA-ATTGGG 40
BSNT_03264___ 42 TCAA--------TCTATCCTGACTG-ACGAAAGCTCTGGACATGACTGGC 82
|||| | |||| |.|| ||||| |.||.||||||||||
RBAM_020030__ 41 TCAAAGAAAAGCT-TATC---AATGAACGAA----CGGGCCATGACTGGC 82
BSNT_03264___ 83 ATCATGTATCAAGAGTAGCAGATCTTGCAGCGTATATTGGAGAAAAGGAA 132
.||||.|.||..|.||.|||...|||.|.|..||||| |..|||||.|.
RBAM_020030__ 83 TTCATATTTCCCGGGTCGCAACACTTTCTGTTTATAT--GGCAAAAGAAG 130
BSNT_03264___ 133 AAAGCG--GATTTGTTCATTGTTGAAACGGCGGCTTTGGTTCATGATTTA 180
||.||| ||.||.||.||...|||.|||||.||..|||||||||||.||
RBAM_020030__ 131 AAGGCGCCGACTTATTTATCACTGAGACGGCCGCGCTGGTTCATGATCTA 180
BSNT_03264___ 181 ATTGATGTGAAGCTGCCTGACACG--------GTCAGGCTTTCTGTGAGC 222
|||||.|..||||| || |..|||||..|.|.|.||
RBAM_020030__ 181 ATTGACGCCAAGCT--------CGAAAAAAGCGAAAGGCTGACGGCGGGC 222
BSNT_03264___ 223 GAAGT-ATATGATCAGCTCGTTTTTTTCGGAGTAGGAAAAGAT-AATGCT 270
||||| |.| ||.|.|||.|.|..|||| ||.|| ...|||
RBAM_020030__ 223 GAAGTGACA-GAACGGCTGGCTGCTTTC----------AACATCGCGGCT 261
BSNT_03264___ 271 GA-------CAGGGTGATTC----ATATTATAACAAGGATGTCCTTTCGG 309
|| || ||.|| || |||||||.||.||.|||||.||..|.
RBAM_020030__ 262 GACTCCATTCA-GGAGA-TCACGGATATTATCACGAGAATGTCATTCAGA 309
BSNT_03264___ 310 GACAGGGGGAAATTGGCG---AAGGAGCCGCTCTCAATTGAAGGAAAAGC 356
.|||||| ||.||..| |||..||||||.|||.|.||.||.||||.
RBAM_020030__ 310 CACAGGG---AACTGCTGATAAAGCGGCCGCTTTCATTGGAGGGGAAAGT 356
BSNT_03264___ 357 CGTACAGGATGCTGACAGACTTGATGCGATTGGTGCTGTCGGCATTGCGA 406
.||.||||||||.||||..|||||||||||.||.||.|..|||||.|..|
RBAM_020030__ 357 TGTTCAGGATGCAGACATGCTTGATGCGATCGGCGCAGCGGGCATCGGCA 406
BSNT_03264___ 407 GAGCTTTCATGTTTGCGGGCGCAAAAGGGCATGGCC--TTTATGGAGATG 454
|.|||||.||||||||.||.||.||.||.||| || |.||.|| ||
RBAM_020030__ 407 GGGCTTTTATGTTTGCCGGGGCGAAGGGTCAT--CCGATGTACGG---TG 451
BSNT_03264___ 455 AGCAAA-------GC--GCCTACGCTCATTTTTTTCATAAGCTGTTGCGG 495
..|||| || ||| |||.|.....||||..|..|...|
RBAM_020030__ 452 CTCAAACAAGTGTGCTGGCC------CATATAGAGGATAAATTAATCAAG 495
BSNT_03264___ 496 CTGAAAGATATGATGAATACAGACACTGCA-CGGGAAC-----TGGCAGA 539
||.||||...|.|||||||||.| | ||||..| |.|||||
RBAM_020030__ 496 CTTAAAGGCTTAATGAATACAAA------AGCGGGGGCCGGTTTAGCAGA 539
BSNT_03264___ 540 AGAAAGACA-CAATTTTATGCTT---CAGTTTGTCCGCC--AATTAGAAA 583
.||..|.|| |||||| ||| |||||.| ||||| .||...|||
RBAM_020030__ 540 GGAGCGGCATCAATTT----CTTTTACAGTTCG-CCGCCCGTATCCAAAA 584
BSNT_03264___ 584 AAGAAATACCCGGGATTGATGCCAAAA------CGTCGTAA--------- 618
|||| ..||||.||| || ||||| ||.||.||
RBAM_020030__ 585 AAGA---GGCCGGCATT--TG-CAAAAGCTAAGCGGCGCAATAGAACGCT 628
BSNT_03264___ 618 ----------------- 618
RBAM_020030__ 629 TGTGCCGACTATGTTAG 645
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