Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03282 and RBAM_020170

See Amino acid alignment / Visit BSNT_03282 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:26
# Commandline: needle
#    -asequence dna-align/BSNT_03282___ypbS.1.9828.seq
#    -bsequence dna-align/RBAM_020170___ypbS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03282___ypbS-RBAM_020170___ypbS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03282___ypbS-RBAM_020170___ypbS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03282___ypbS
# 2: RBAM_020170___ypbS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 259
# Identity:     196/259 (75.7%)
# Similarity:   196/259 (75.7%)
# Gaps:           2/259 ( 0.8%)
# Score: 716.0
# 
#
#=======================================

BSNT_03282___      1 ATGTCAGAGGTACATAAAGCAATTTCAGCACATTCATCAAAACAGCACGA     50
                     ||||||||.||.|||||||||||||||||||||||..||||||||||..|
RBAM_020170__      1 ATGTCAGAAGTCCATAAAGCAATTTCAGCACATTCCGCAAAACAGCATCA     50

BSNT_03282___     51 GCATATCAAAGCATTTATGCGTCTTGAAAATATGCGTGAATTGGCGATTG    100
                     ||||.|||||.|||||.|.|..|||||..||..|||||||..|||.||||
RBAM_020170__     51 GCATGTCAAAACATTTGTACAGCTTGATTATGAGCGTGAACAGGCCATTG    100

BSNT_03282___    101 AAGAAGTTGTTGCTAAATGCAGAAACGATGAGCCTTATACTACAGATGCA    150
                     ||||||...|||..|||||||||.|..||.|.||.|..||.||||||||.
RBAM_020170__    101 AAGAAGCCATTGTAAAATGCAGACAGAATAAACCGTTCACGACAGATGCC    150

BSNT_03282___    151 ATTAATGAAATTACCGAGCAAATGAATCAGCTCGCTAAAAAAGGCATCGT    200
                     ||.||||..||.||||...|||||||.|||||.||.|||||.||||||||
RBAM_020170__    151 ATCAATGGCATCACCGCAAAAATGAACCAGCTGGCGAAAAAGGGCATCGT    200

BSNT_03282___    201 CCCGACAAGACGGCTTGTATCAAAAGAAATGGTCAGAGAATACGTAAGCC    250
                     .|||..||||||..|.|||....||||.|||||.|.|||||.|||.|||.
RBAM_020170__    201 GCCGCAAAGACGATTCGTAAGTGAAGAGATGGTGAAAGAATTCGTCAGCA    250

BSNT_03282___    251 G-CATGTAA    258
                     | || ||||
RBAM_020170__    251 GACA-GTAA    258


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