Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03301 and RBAM_020320

See Amino acid alignment / Visit BSNT_03301 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:28
# Commandline: needle
#    -asequence dna-align/BSNT_03301___ypsC.1.9828.seq
#    -bsequence dna-align/RBAM_020320___ypsC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03301___ypsC-RBAM_020320___ypsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03301___ypsC-RBAM_020320___ypsC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03301___ypsC
# 2: RBAM_020320___ypsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1165
# Identity:     911/1165 (78.2%)
# Similarity:   911/1165 (78.2%)
# Gaps:          23/1165 ( 2.0%)
# Score: 3563.5
# 
#
#=======================================

BSNT_03301___      1 ATGAAGAAGTATACACTAATTGCAACGGCGCCGATGGGCATTGAAGCTGT     50
                     |||||||||||.||||||||.||.||||||||||||||.||.|||||..|
RBAM_020320__      1 ATGAAGAAGTACACACTAATAGCGACGGCGCCGATGGGAATCGAAGCGAT     50

BSNT_03301___     51 TGTCGCAAAGGAAGTACGAGATTTAGGATACGAATGCAAGGTTGATAACG    100
                     .|||||.||.|||||.||.||||||||.||.||||||||.||.||.||||
RBAM_020320__     51 CGTCGCCAAAGAAGTGCGTGATTTAGGTTATGAATGCAAAGTAGACAACG    100

BSNT_03301___    101 GGAAAGTTATTTTTGAAGGTGATGCACTTGCCATCTGCCGTGCGAACCTT    150
                     |.|||||.|||||||||||.|||||.|||||.||||||||.||.|||.|.
RBAM_020320__    101 GAAAAGTCATTTTTGAAGGAGATGCGCTTGCGATCTGCCGCGCTAACTTA    150

BSNT_03301___    151 TGGCTTAGAACAGCCGACCGCATAAAGGTTCAGGTTGCTTCTTTTAAAGC    200
                     |||||..|.||.||.||||||||.||.||.|||||.||....|||.|.||
RBAM_020320__    151 TGGCTGCGGACGGCTGACCGCATTAAAGTACAGGTCGCCGAGTTTCAGGC    200

BSNT_03301___    201 GAAAACATTTGATGAACTGTTTGAAAAAACGAAAGCGATTAACTGGCGCT    250
                     ||||||.||||||||.||||||||||||||.|||||||||.||||||||.
RBAM_020320__    201 GAAAACGTTTGATGAGCTGTTTGAAAAAACAAAAGCGATTGACTGGCGCG    250

BSNT_03301___    251 CATTTATACCTGAAAACGGGAAATTCCCTGTCATCGGAAAATCGGTAAAA    300
                     |.|..||.||.|||||||..||.|||||.||.||||||||.||.||.|||
RBAM_020320__    251 CGTACATTCCGGAAAACGCAAAGTTCCCCGTTATCGGAAAGTCCGTGAAA    300

BSNT_03301___    301 TCAACACTTGCAAGCGTCCCCGACTGTCAGCGGATCGTCAAAAAAGCAAT    350
                     |||...|||||.||.||.||.|||||.|||||||||||||||||.||.||
RBAM_020320__    301 TCAGTGCTTGCCAGTGTGCCTGACTGCCAGCGGATCGTCAAAAAGGCGAT    350

BSNT_03301___    351 TGTTGAAAAGCTCAAGCTGCAGTCCGGCAAAGCCAATGATTGGATTGAAG    400
                     .|..||||||||.||.|||||.||.||.|||...|||||.||||||||||
RBAM_020320__    351 AGCGGAAAAGCTGAAACTGCAATCAGGAAAACAAAATGAATGGATTGAAG    400

BSNT_03301___    401 AAACAGGTGCCGAGTATAAAGTGGAAATTTCTTTATTGAAAGATCAGGCT    450
                     ||||.||..||||||||||.|||||.|||||..|.||.||||||.|.||.
RBAM_020320__    401 AAACGGGCCCCGAGTATAAGGTGGAGATTTCCCTTTTAAAAGATAAAGCC    450

BSNT_03301___    451 CTGATTACACTGGACTCATCAGGGACGGGCCTTCACAAACGAGGATACCG    500
                     .||.||||||||||.||||||||.||.||||||||||||||.||||||.|
RBAM_020320__    451 GTGCTTACACTGGATTCATCAGGAACAGGCCTTCACAAACGGGGATACAG    500

BSNT_03301___    501 TGTCGATCAGGGCGGTGCGCCGATTAAAGAAACACTTGCTGCCGCTTTGG    550
                     .||.||||||||.||.||.|||||||||||.||.||.||||||||.||..
RBAM_020320__    501 GGTTGATCAGGGAGGAGCTCCGATTAAAGAGACGCTCGCTGCCGCGTTAA    550

BSNT_03301___    551 TGCAATTAACCAATTGGACGCCGGACCGCCCGTTTGTTGATCCTTTCTGC    600
                     |.||.||||||||.||||||||.|||||.|||||.||.|||||.||||||
RBAM_020320__    551 TTCAGTTAACCAACTGGACGCCTGACCGTCCGTTCGTCGATCCGTTCTGC    600

BSNT_03301___    601 GGCTCCGGAACAATCGCGATAGAAGCGGCGCTAATCGGCCAAAACATCGC    650
                     ||.|||||.||.|||||.||.|||||.||..|||||||.||||||||.||
RBAM_020320__    601 GGTTCCGGCACGATCGCCATTGAAGCCGCTTTAATCGGACAAAACATTGC    650

BSNT_03301___    651 CCCGGGATTCAACCGCGATTTTGTATCAGAGGATTGGGAATGGATCGGTA    700
                     .||.||.||.|||||.||||||||.|||||.||.||||||||||||||.|
RBAM_020320__    651 TCCCGGTTTTAACCGTGATTTTGTTTCAGAAGACTGGGAATGGATCGGAA    700

BSNT_03301___    701 AAGATCTGTGGAACAAAGCGCGGCTTGAAGTCGAAGAAAAGGCAAATTAT    750
                     ||||.||||||.||||.|||||.||||||||.|||||||||||.||.|||
RBAM_020320__    701 AAGAACTGTGGGACAAGGCGCGTCTTGAAGTGGAAGAAAAGGCGAACTAT    750

BSNT_03301___    751 GATCAGCCGCTTACA-ATTTTCGCTAGCGACATAGACCACCGCATGGTTC    799
                     |||||||||| |.|| ||.||.||.||.|||.||||.|||||.|||||..
RBAM_020320__    751 GATCAGCCGC-TGCAGATCTTTGCCAGTGACGTAGATCACCGGATGGTAA    799

BSNT_03301___    800 AAATCGCAAAAGAAAATGCAGAGGAAGCAGGATTGGGAGATTTAATCCAG    849
                     |.|||||.||||||||.|||||.|||||.|||.|.||.||..|.|||.|.
RBAM_020320__    800 ACATCGCCAAAGAAAACGCAGAAGAAGCGGGACTTGGTGACCTGATCGAA    849

BSNT_03301___    850 TTTAAGCAGATGCAGGTCAAAGACTTTACCACAAATCTGGAGTTTGGCGT    899
                     |..|||||.||||.|||..|.||.|||||.||.||.||.||.|..|||||
RBAM_020320__    850 TGCAAGCAAATGCGGGTGCAGGATTTTACGACGAAGCTCGAATACGGCGT    899

BSNT_03301___    900 AATTGTCGGCAACCCGCCATATGGAGAGCGTCTCGGCGAGAAAAAAGCCG    949
                     |||.|||||.|||||.||.||.||.||.||.||||||||.||||..|..|
RBAM_020320__    900 AATCGTCGGAAACCCTCCGTACGGCGAACGGCTCGGCGAAAAAAGGGAAG    949

BSNT_03301___    950 TTGAGCAGATGTACAAAGAAATGGGGCAGGCGTTCGAGCCGCTTGATACT    999
                     |.|||||||||||.|||||||||||.|.|||.||.||..|.||||||||.
RBAM_020320__    950 TCGAGCAGATGTATAAAGAAATGGGCCGGGCATTTGAATCTCTTGATACA    999

BSNT_03301___   1000 TGGTCTGTGTATATGCTGACATCAAATGAAAACTTTGAGGAAGCATATGG   1049
                     ||||||||.||.|||.|.||.|||||||||.|.|||||.||.|..||.||
RBAM_020320__   1000 TGGTCTGTCTACATGTTAACGTCAAATGAACAATTTGAAGAGGTCTACGG   1049

BSNT_03301___   1050 CAGAAAAGCAACGAAGAAACGAAAACTCTTTAACGGGTTTATTAAAACGG   1099
                     .|||||||||||.||.|||||.||.|||||||||||.|||||.|||||||
RBAM_020320__   1050 AAGAAAAGCAACCAAAAAACGGAAGCTCTTTAACGGTTTTATCAAAACGG   1099

BSNT_03301___   1100 ATTATTATCAATACTGGTCAAAAGTAAGGCCGCAGCGTAAGAAAACA---   1146
                     ||||||||||.||||||.|.|||  |||          ||.||||||   
RBAM_020320__   1100 ATTATTATCAGTACTGGGCTAAA--AAG----------AAAAAAACAATT   1137

BSNT_03301___   1147 -GAAAACGCATAA--   1158
                      .||||   |||.  
RBAM_020320__   1138 TCAAAA---ATATAG   1149


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