Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03309 and RBAM_020370

See Amino acid alignment / Visit BSNT_03309 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:29
# Commandline: needle
#    -asequence dna-align/BSNT_03309___yprA.1.9828.seq
#    -bsequence dna-align/RBAM_020370___yprA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03309___yprA-RBAM_020370___yprA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03309___yprA-RBAM_020370___yprA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03309___yprA
# 2: RBAM_020370___yprA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2274
# Identity:    1722/2274 (75.7%)
# Similarity:  1722/2274 (75.7%)
# Gaps:          51/2274 ( 2.2%)
# Score: 6400.0
# 
#
#=======================================

BSNT_03309___      1 ATGAAAAAGAAATCACTGACTGAACTCATTTCTGATTTAAAAGGAA--AT     48
                     |||||.||.||||||||||..|||||.|||...||.||||||  ||  ||
RBAM_020370__      1 ATGAAGAAAAAATCACTGAGCGAACTGATTCAGGAATTAAAA--AATCAT     48

BSNT_03309___     49 GAAAACGTTGTGAATTGGCATGAAATTGAGCCTCGGGAAGCAAAAACAAG     98
                     |||||..|||||.|||||||||||...||.||.|||||.||.|||||.|.
RBAM_020370__     49 GAAAATATTGTGCATTGGCATGAAGAGGAACCGCGGGAGGCGAAAACCAT     98

BSNT_03309___     99 GCCTATGCCCGA--AAGTATAGACGAGAGAATCAAAGCGGCCCTTTCGAA    146
                     |||.|||||.||  |||||.|..||| |.|.|| ..||||  ||.|||||
RBAM_020370__     99 GCCGATGCCGGAGCAAGTAGATCCGA-ACATTC-GGGCGG--CTCTCGAA    144

BSNT_03309___    147 A--AGGGGCATTGATGAACTATATACTCACCAATATTCCGCTTTTCAATA    194
                     |  |||||.||.||....||.|.|||.||.|||||.|||||||||||...
RBAM_020370__    145 AAGAGGGGGATCGAGCGGCTCTTTACACATCAATACTCCGCTTTTCAGAC    194

BSNT_03309___    195 TGTGCAAAAAGGAGAAAGCATTGTTACCGTAACGCCAACAGCATCAGGAA    244
                     .||.|||||.||||||||||||||..|.||.||.||.||.||.||.||||
RBAM_020370__    195 GGTTCAAAACGGAGAAAGCATTGTGGCTGTCACACCGACGGCCTCCGGAA    244

BSNT_03309___    245 AAACGTTATGCTACAACCTCCCAGTCCTGCAGTCCATCGCCCAAGATGAA    294
                     ||||..|.|||||.||.||.||.||.||.|||||.|||||..||||||..
RBAM_020370__    245 AAACACTGTGCTATAATCTTCCGGTTCTTCAGTCTATCGCGGAAGATGCC    294

BSNT_03309___    295 ACAAACCGGGCGTTATATTTATTTCCGACTAAAGCGCTGGCACAAGACCA    344
                     .|||.|||.|||.|.||||||||||||||.||.|||||.||.||.||.||
RBAM_020370__    295 TCAAGCCGCGCGCTTTATTTATTTCCGACAAAGGCGCTCGCGCAGGATCA    344

BSNT_03309___    345 AAAGAGCGAGCTAAATGAAATTATTGATGAAATGGGCATTGATATTAAAA    394
                     |||.||||||||.||.|||||.||.||.||.|.||||||.||.|||||||
RBAM_020370__    345 AAAAAGCGAGCTGAACGAAATCATAGACGAGACGGGCATGGACATTAAAA    394

BSNT_03309___    395 GCTTTACATATGATGGGGATACGTCTCCGGCAATCAGACAAAAGGTGAGA    444
                     ||||.||.|||||.||.||||||||||||||.|||||.||.||.||.|||
RBAM_020370__    395 GCTTCACCTATGACGGAGATACGTCTCCGGCCATCAGGCAGAAAGTCAGA    444

BSNT_03309___    445 AAAGCAGGTCATATTGTCATTACAAACCCCGATATGCTGCATTCTGCCAT    494
                     |||||.||.||||||||.||.|||||.|||||||||||.|||||.||.||
RBAM_020370__    445 AAAGCCGGGCATATTGTGATCACAAATCCCGATATGCTTCATTCAGCTAT    494

BSNT_03309___    495 TCTACCGCATCATACGAAATGGGTCAGTTTGTTTGAAAACCTTAAGTATA    544
                     |||.||.||.|||||.||||||||.|||.|||||||||||||.||.||||
RBAM_020370__    495 TCTTCCCCACCATACAAAATGGGTGAGTCTGTTTGAAAACCTGAAATATA    544

BSNT_03309___    545 TCGTCATCGATGAGCTTCATACGTATCGAGGTGTGTTCGGCAGCCATGTG    594
                     |||||||.|||||..|.||||||||.||.||.||.|||||||||||||||
RBAM_020370__    545 TCGTCATTGATGAATTACATACGTACCGCGGCGTATTCGGCAGCCATGTG    594

BSNT_03309___    595 GCAAATGTGATCCGGCGGCTAAAGCGGATCTGCCGGTTTTATGGAAGTGA    644
                     ||.||.||.|||||.||..|||.|.|.||||||...|||||.||||||..
RBAM_020370__    595 GCGAACGTCATCCGCCGTTTAATGAGAATCTGCGCTTTTTACGGAAGTAC    644

BSNT_03309___    645 TCCGGTTTTTATTTGTACTTCCGCAACAATTGCCAACCCAAAGGAATTGG    694
                     .|||...|||||.|||||.|||||.|||||.|||||.||.|.||||||||
RBAM_020370__    645 GCCGTCATTTATCTGTACATCCGCCACAATCGCCAATCCGAGGGAATTGG    694

BSNT_03309___    695 GAGAGCAGCTGACAGGCAAACCGATGCGGCTGGTCGATGACAACGGCGCA    744
                     ..|||||||||||.||.|||.|..||||.|||.|.||.||.||||||||.
RBAM_020370__    695 CGGAGCAGCTGACGGGAAAATCAGTGCGCCTGATTGACGATAACGGCGCC    744

BSNT_03309___    745 CCGAGCGGACGCAAGCATTTTGTGTTTTACAATCCGCCAATTGTGAACAA    794
                     |||..||||.|.|||||.||||..|||||||||||.||.|||||.||.||
RBAM_020370__    745 CCGGCCGGAAGAAAGCACTTTGCTTTTTACAATCCTCCGATTGTAAATAA    794

BSNT_03309___    795 ACCGCTCAATATTAGAAGGAGCGCAACCGCAGAAGTGAATGAACTGGCGA    844
                     ||||||..|||||.|||..|||||.||||..||||||||.|||||.||.|
RBAM_020370__    795 ACCGCTGCATATTCGAAAAAGCGCCACCGTGGAAGTGAACGAACTTGCCA    844

BSNT_03309___    845 AAGAGTTCCTTAAAAACAAAG-TGCAGACCATTGTTTTTGCCAGAAGCAG    893
                     || |.||..|||||||..||| |.|||||.||||||||||||||||||.|
RBAM_020370__    845 AA-ACTTTTTTAAAAAATAAGATCCAGACGATTGTTTTTGCCAGAAGCCG    893

BSNT_03309___    894 AGTTCGGGTGGAAATTATTTTAAGCCATATTCAGGAGCTTGTGAAAAAAG    943
                     .||.|||||.|||||||||||||||||.|||||||||.|.||.|||||||
RBAM_020370__    894 TGTCCGGGTTGAAATTATTTTAAGCCACATTCAGGAGATCGTAAAAAAAG    943

BSNT_03309___    944 AGATTGGAACAAAATCAATCAGAGGCTATCGGGGAGGCTATCTGCCGAAA    993
                     |.||.||..|.||.||..|||||||||||||.||.||.|||||.||||||
RBAM_020370__    944 AAATCGGGTCGAAGTCTGTCAGAGGCTATCGCGGCGGATATCTTCCGAAA    993

BSNT_03309___    994 GAGCGAAGAGAAATCGAAAGAGGCCTGAGAGAAGGCGACATTTTAGGAGT   1043
                     ||..||||||||||.||..|.||..|.|||||.||...||||.|.||.||
RBAM_020370__    994 GAAAGAAGAGAAATAGAGCGGGGGTTAAGAGACGGAAGCATTCTCGGCGT   1043

BSNT_03309___   1044 GGTCAGTACGAATGCCTTAGAGCTTGGTGTTGATATCGGCCAGCTGCAAG   1093
                     .|||||.||.||.||..|.|||||.||.|||||||||||||||||.||.|
RBAM_020370__   1044 TGTCAGCACAAACGCGCTGGAGCTCGGCGTTGATATCGGCCAGCTTCAGG   1093

BSNT_03309___   1094 TGTGTGTAATGACTGGGTATCCCGGAAGTGTTGCAAGTGCTTGGCAGCAG   1143
                     |.||.||.|||||.|||||.||.||.|||||.||.||.||.|||||||||
RBAM_020370__   1094 TCTGCGTGATGACGGGGTACCCGGGCAGTGTCGCGAGCGCATGGCAGCAG   1143

BSNT_03309___   1144 GCCGGACGAGCCGGCAGAAGACACGGTGA-------ATCTTTGATTATTT   1186
                     ||.||.||.|||||..|..|.||.||.||       ||| .|||      
RBAM_020370__   1144 GCGGGCCGGGCCGGGCGGCGGCAGGGAGAGGCGCTTATC-GTGA------   1186

BSNT_03309___   1187 TGGTAGCCAATTCAACACCGATTGACCAATATATTGTGCGGCATCCTGAA   1236
                     ||||.||.||.||....||||||||||||||||||||.||.||||||||.
RBAM_020370__   1187 TGGTGGCGAACTCTGATCCGATTGACCAATATATTGTCCGCCATCCTGAT   1236

BSNT_03309___   1237 TATTTCTTTAATCGTTCGCCGGAATCTGCAAGAATCAATCCGGAGAATTT   1286
                     |||||||||||.||.|||||.|||||||||||.||.|||||.||.|||.|
RBAM_020370__   1237 TATTTCTTTAAACGCTCGCCTGAATCTGCAAGGATTAATCCTGATAATCT   1286

BSNT_03309___   1287 GATTATTTTAGTAGACCACTTAAAGTGTGCGGCTTATGAGCTTCCTTTTA   1336
                     .|||||.||.||.||.|||.|.||.||.||.||.||||||||.|||||.|
RBAM_020370__   1287 CATTATATTGGTCGATCACCTGAAATGCGCCGCGTATGAGCTGCCTTTCA   1336

BSNT_03309___   1337 GAGCTGATGAAGAATTTGGAGCCATGGAAGTCAGTGATATTCTTGAGTAT   1386
                     ||||.||||||..|||.||||..|..||.|..||.||.|||||.||||||
RBAM_020370__   1337 GAGCCGATGAAACATTCGGAGAAAATGATGCAAGAGACATTCTCGAGTAT   1386

BSNT_03309___   1387 CTTCAGGAAGAGGCTGTTCTTCACCGCAACGGCGAACGGTACCATTGGGC   1436
                     .|..|.|||||.|..||.||||||...|||.|||||||.||.||.|||||
RBAM_020370__   1387 TTAGAAGAAGAAGGGGTGCTTCACGAAAACCGCGAACGCTATCACTGGGC   1436

BSNT_03309___   1437 AAGTGAGTCGTTTCCTGCTTCAAACATCAGTTTGCGTTCCGCCTCCCAGG   1486
                     |||.||.||.|||||.||.||.|||||||||.|.|||||.||.||.||||
RBAM_020370__   1437 AAGCGAATCTTTTCCCGCCTCCAACATCAGTCTCCGTTCGGCGTCACAGG   1486

BSNT_03309___   1487 AAAATGTCGTTATAGTTGATCAGTCGGATATTGCAAATGTAAGGATTATC   1536
                     ||||.||.||.||.|||||.|.|||.||.|..||..||||||..||.|||
RBAM_020370__   1487 AAAACGTGGTCATCGTTGACCGGTCAGAGACGGCTGATGTAAAAATCATC   1536

BSNT_03309___   1537 GGTGAAATGGACCGTTTTAGTGCGATGACGCTTTTACATGATGAAGCAAT   1586
                     ||.|||||||||||.||.||.||||||||||||.|.|||||||||||.||
RBAM_020370__   1537 GGAGAAATGGACCGCTTCAGCGCGATGACGCTTCTTCATGATGAAGCGAT   1586

BSNT_03309___   1587 TTATTTGCATGAAGGCGTTCAGTATCAAGTTGAGAAGCTCGATTGGGACC   1636
                     ||||.|.||||||||.||.|||||.||.|||||.|||||.||||||||||
RBAM_020370__   1587 TTATCTTCATGAAGGGGTGCAGTACCAGGTTGAAAAGCTTGATTGGGACC   1636

BSNT_03309___   1637 ATAAAAAGGCGTATGTCAGAAAAGTCGATGTCGAATATTATACGGATGCA   1686
                     |||||||.|||||.||..||||.||||||||||||||||||||.|||||.
RBAM_020370__   1637 ATAAAAAAGCGTACGTGCGAAAGGTCGATGTCGAATATTATACAGATGCC   1686

BSNT_03309___   1687 AACCTGGCAGTTCAGCTGAAGGTATTAGAAATCGATAAAAC--------G   1728
                     ||..|.||.||.||||||||.||..|.||.||.||.|.|||        |
RBAM_020370__   1687 AATTTAGCGGTGCAGCTGAAAGTGCTGGACATTGACAGAACGGACAGCAG   1736

BSNT_03309___   1729 AAAGAAAAAAGCCGTACGTCATTGCACTACGGAGACGTCACTGTCAATGC   1778
                     ||||||||.||||        ||.||.|.|||.||.||.||.||.||.||
RBAM_020370__   1737 AAAGAAAACAGCC--------TTACATTTCGGCGATGTAACCGTGAACGC   1778

BSNT_03309___   1779 CCTGCCGACCATTTTTAAAAAAATAAAAATGACCACTTTTGAAAATATTG   1828
                     .||.|||||.||.|||||||||||.||||||||.||.|||||||||||.|
RBAM_020370__   1779 ACTTCCGACAATATTTAAAAAAATTAAAATGACGACATTTGAAAATATAG   1828

BSNT_03309___   1829 GGTCTGGACCTATTCATTTGCCGGAAGAAGAACTGCATACAAGTGCAGCT   1878
                     |.||.||.||.||||||.|.||.|||||||||||||||||.|||||.||.
RBAM_020370__   1829 GATCAGGGCCGATTCATCTTCCAGAAGAAGAACTGCATACCAGTGCTGCC   1878

BSNT_03309___   1879 TGGCTCGAAATCAAAACAG-CGGATGAAGACATCGGGGAAAAGACACTGG   1927
                     |||||.| |||..|||.|| |||||...||.|||||.|||||.||.||.|
RBAM_020370__   1879 TGGCTTG-AATTGAAAGAGACGGATTCGGAGATCGGCGAAAAAACGCTTG   1927

BSNT_03309___   1928 AACAGCTGCTTCTTGGCATCTCGAATGTGCTGCAGCATATTGTCCCTGTG   1977
                     |||||||||||.|.|||||..|..|.||.|||||||||||.||.|||||.
RBAM_020370__   1928 AACAGCTGCTTTTAGGCATTGCCCACGTCCTGCAGCATATCGTGCCTGTA   1977

BSNT_03309___   1978 TATATCATGTGTGATCGAAATGATGTTCATGTTGTTTCTCAAATTAAAGC   2027
                     ||..|||||||.||.||||||||.||.|||||.||..|.|||||.|||||
RBAM_020370__   1978 TACGTCATGTGCGACCGAAATGACGTGCATGTCGTGCCGCAAATCAAAGC   2027

BSNT_03309___   2028 AGCCCATACCGGATTGCCAACCATATTTTTATATGATCATTATCCGGGCG   2077
                     .||.|||||||||.|.||.||.||.|||.|.|||||||||||||||||||
RBAM_020370__   2028 CGCACATACCGGACTTCCGACAATCTTTCTGTATGATCATTATCCGGGCG   2077

BSNT_03309___   2078 GTATCGGTTTGGCGGAGGAAGTCTTTAAACGTTTTTCAGACATTAATGAA   2127
                     |.|||||..|.||.||.|||||.|.|||.||.|||...||.||.||||||
RBAM_020370__   2078 GAATCGGACTTGCCGATGAAGTATATAAGCGATTTGATGAAATCAATGAA   2127

BSNT_03309___   2128 GCGGCGAAACAACTGATTACACATTGTCCTTGTCATGACGGCTGTCCGTC   2177
                     |.|||..|.|..|||||.|.|||.|||||.|||||.|||||.|||||.||
RBAM_020370__   2128 GGGGCTGAGCGCCTGATCAGACAATGTCCATGTCAAGACGGATGTCCTTC   2177

BSNT_03309___   2178 TTGTATAGGTACAGAAATAGAAGGGATAAAAGCAAAGGAAAG-AATTTTG   2226
                     .||.||.||..|.|||||||||||.|||.|.||||| ||||| .||..|.
RBAM_020370__   2178 CTGCATCGGCTCCGAAATAGAAGGAATAGATGCAAA-GAAAGCGATACTC   2226

BSNT_03309___   2227 CAGCTGTTGGATCAAATGTCGTAA   2250
                     |.|||.|||.||.|..|   ||||
RBAM_020370__   2227 CGGCTCTTGAATTACGT---GTAA   2247


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