Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03322 and RBAM_020450

See Amino acid alignment / Visit BSNT_03322 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:29
# Commandline: needle
#    -asequence dna-align/BSNT_03322___yppC.1.9828.seq
#    -bsequence dna-align/RBAM_020450___yppC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03322___yppC-RBAM_020450___yppC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03322___yppC-RBAM_020450___yppC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03322___yppC
# 2: RBAM_020450___yppC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 986
# Identity:     738/986 (74.8%)
# Similarity:   738/986 (74.8%)
# Gaps:          58/986 ( 5.9%)
# Score: 2673.0
# 
#
#=======================================

BSNT_03322___      1 GTGCAAGAACAACAGACCATTAGAAAGC----TTCTGAGCCGGATTG---     43
                     |||||..|||.|||||||    |.||.|    ||||..|||.|||.|   
RBAM_020450__      1 GTGCATAAACGACAGACC----GTAACCGCCATTCTTCGCCTGATCGAAA     46

BSNT_03322___     44 -AGCGGCAGACAAAAATAAAAAACGCGGATAACATTTCAAGAACAAATGC     92
                      ||    ||||.|||||||||||.||.|||||.|||||..|.||.|||||
RBAM_020450__     47 AAG----AGACGAAAATAAAAAATGCCGATAATATTTCCCGGACGAATGC     92

BSNT_03322___     93 TTATAAAGCATTTTACGACCGTCACCCGGAAATCAAATGGTCGCTTTTGG    142
                     .||||||||||.|||.|||||.||.||.||.|||||.|||.|||||||||
RBAM_020450__     93 CTATAAAGCATATTATGACCGCCATCCTGAGATCAAGTGGCCGCTTTTGG    142

BSNT_03322___    143 CTTCTTTCGTTTCTCGTAATGCCGGCTGGTCAATGACTGACTTAAAAGGC    192
                     |.||.||.||.||.||.|||||.||||||||.||||||||.||||.||||
RBAM_020450__    143 CATCGTTTGTGTCCCGCAATGCGGGCTGGTCGATGACTGATTTAAGAGGC    192

BSNT_03322___    193 AGT-CTGTTTCAGCTTGGACTCCGTGAGAGACAGCAAGAA----TGGTTC    237
                      || ||.|.||||...||   ||.|||.|| |||..||||    |||||.
RBAM_020450__    193 -GTCCTTTATCAGGAGGG---CCTTGACAG-CAGTCAGAAAAACTGGTTT    237

BSNT_03322___    238 TT--TTTAGCCTATGAAAGAGCGAACTGGCTTATTTTTTCGGATGCCTAT    285
                     ||  |||  |.||||||||.|||||.|||||.||||||||.|||||||||
RBAM_020450__    238 TTCCTTT--CGTATGAAAGGGCGAATTGGCTGATTTTTTCTGATGCCTAT    285

BSNT_03322___    286 CCGCAGCTTCTACTATACCACTGGTCAAAAAGAGTTGGGAAACCGCTGTT    335
                     ||.||||||||..|.|||||.|||||||||..|.|.||..||||.||.||
RBAM_020450__    286 CCTCAGCTTCTGGTCTACCAGTGGTCAAAACAAATCGGCGAACCTCTTTT    335

BSNT_03322___    336 ---TCATCTGCTGCATGTGTTTGGCGTCTCACAATTTATGTCGGAAGAAT    382
                        ||||||.|...||   ||..|||||||....||||||..||||||||
RBAM_020450__    336 CCGTCATCTTCCTTAT---TTCCGCGTCTCGGCTTTTATGCAGGAAGAAT    382

BSNT_03322___    383 GGACCCGTTTTTGGCATGAGCGAAATACGGAGCGGCTAATGTATGCCCTC    432
                     ||..|||.|||||||.|||..||.|||||||.|||||.||||||||.||.
RBAM_020450__    383 GGTTCCGCTTTTGGCGTGACGGAGATACGGAACGGCTCATGTATGCTCTT    432

BSNT_03322___    433 ATTATAAATGAACAAAACACTATCCAAACACCTATTATACAAAATCCTTC    482
                     |||||||||||||||||||||||||||.||||||||||||||||||||||
RBAM_020450__    433 ATTATAAATGAACAAAACACTATCCAAGCACCTATTATACAAAATCCTTC    482

BSNT_03322___    483 GTTTAAAAAGAATGTTTTTGACACGATTCCTTTTTATTTAAGTGATTGGT    532
                     ||||||||||||||||||||.|||||||||||||||||||||||||||||
RBAM_020450__    483 GTTTAAAAAGAATGTTTTTGGCACGATTCCTTTTTATTTAAGTGATTGGT    532

BSNT_03322___    533 TACATTTTAACACCGTTATTTTTCCTTCCTCAAATGGGTTTCTTTACGGC    582
                     |.||.|||||.||.||.||.||.|||||.|...|.||...|.|.|||||.
RBAM_020450__    533 TTCACTTTAATACGGTGATATTCCCTTCATTTGACGGACATTTATACGGA    582

BSNT_03322___    583 ATTTCAGTGAAACGCTTTTCAAAGGCGGAGGAAAGGATAAGGCTGGGAAA    632
                     |||||.||.|||||.||||||||..|.||.||.||.||.|.|||.|||||
RBAM_020450__    583 ATTTCCGTCAAACGGTTTTCAAAAACCGAAGAGAGAATTACGCTCGGAAA    632

BSNT_03322___    633 GCAGCTGTCTCAATTGCTGTTCAAGCCAGAATTGTT--CTCCTCTTTTTA    680
                     .||||||.|.|...|.|||||||..||.||  |.||  |.|.||||||||
RBAM_020450__    633 ACAGCTGGCCCGCCTACTGTTCAGCCCTGA--TCTTCACGCTTCTTTTTA    680

BSNT_03322___    681 TCACTTT-TTGCACACAGTGCCGCACACAGGTTCCCGTTTTGATATGGAA    729
                     .|..||| ||| |.||.||.||.||.||.|||||.||.|||||||||||.
RBAM_020450__    681 CCGTTTTCTTG-ATACCGTTCCTCATACCGGTTCACGCTTTGATATGGAG    729

BSNT_03322___    730 AAGATGATCGGGATTACAAAAAGAACATCTCCTATGCTAAGGACATGCTA    779
                     ||.||||||||.||.|.||||||||||||.||.|||||.||||||..|||
RBAM_020450__    730 AAAATGATCGGCATCAAAAAAAGAACATCACCGATGCTGAGGACAACCTA    779

BSNT_03322___    780 -CCCTGAGTTAATCCACTCATTAGACGGAACGAAA--ACAGATTGGTTTC    826
                      |||...||| ..||||.||||||||||  |||||  .|.||||||||||
RBAM_020450__    780 TCCCATTGTT-GCCCACCCATTAGACGG--CGAAAGGGCGGATTGGTTTC    826

BSNT_03322___    827 ATGGAAAGATAAAGAAAACGTTCTTT-----AGGCGCGAGGAATTGCCGA    871
                     | ..||||.|.|||||||.|..||||     ||    |||.||.||||||
RBAM_020450__    827 A-AAAAAGGTTAAGAAAAGGGGCTTTCTTACAG----GAGAAAATGCCGA    871

BSNT_03322___    872 AGCAGATTGAATTGACAGACTGGTATTTACATAAAAAGCGCCAGCTTCAT    921
                     |.|||.|||||.||||.||||||||.||.||.||||..||..||||.|||
RBAM_020450__    872 AACAGCTTGAACTGACGGACTGGTACTTCCAGAAAAGACGGGAGCTCCAT    921

BSNT_03322___    922 GCGCTTTTTGCGGTGGAGCAGTGGCTGAAAAAATAA    957
                     |||||.||.|||||..|..||||||||||.||||.|
RBAM_020450__    922 GCGCTCTTCGCGGTTAAAGAGTGGCTGAAGAAATGA    957


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