Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03323 and RBAM_020460

See Amino acid alignment / Visit BSNT_03323 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:29
# Commandline: needle
#    -asequence dna-align/BSNT_03323___recU.1.9828.seq
#    -bsequence dna-align/RBAM_020460___recU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03323___recU-RBAM_020460___recU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03323___recU-RBAM_020460___recU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03323___recU
# 2: RBAM_020460___recU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 626
# Identity:     516/626 (82.4%)
# Similarity:   516/626 (82.4%)
# Gaps:          22/626 ( 3.5%)
# Score: 2170.0
# 
#
#=======================================

BSNT_03323___      1 GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTC     50
                     |||||||||||.||.||.||||||||.|||||||||||..|..|||||||
RBAM_020460__      1 GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTC     50

BSNT_03323___     51 ATCCCAAAACAGTCAGAAAAGGGCCCCGTCTTACAGTAATCGCGGAATGA    100
                     ||||||||||||.||||||.||.|.|..||.||||||||||||||.||||
RBAM_020460__     51 ATCCCAAAACAGCCAGAAACGGTCTCATTCATACAGTAATCGCGGCATGA    100

BSNT_03323___    101 CCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAA    150
                     ||||||||||.|||.|.||.|||||||||||||||||||||.|.||||||
RBAM_020460__    101 CCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAA    150

BSNT_03323___    151 ATTGCCGTTATACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCA    200
                     |||||.||.||.|||||||||||||||||.||.||.||||||||.|||||
RBAM_020460__    151 ATTGCTGTCATTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCA    200

BSNT_03323___    201 TTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTACTTTAAACAAT    250
                     .|||||.||||||||.||||||||.|||||.||||||||.||||||||.|
RBAM_020460__    201 CTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTATTTTAAACAGT    250

BSNT_03323___    251 CATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTT    300
                     |.||.|||||.||||||||.||.|||||.||||||||.||.|||||||||
RBAM_020460__    251 CTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTT    300

BSNT_03323___    301 GAGGCGAAAGAAACGAAAAACAAGACCTCTTTCCCCCTGCAGAATTTTCA    350
                     |||||.||||||||.||||||||.||..|.||.|||||||||||||||||
RBAM_020460__    301 GAGGCAAAAGAAACAAAAAACAAAACGGCATTTCCCCTGCAGAATTTTCA    350

BSNT_03323___    351 TGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCT----CAAGACGGT    396
                     |||.||||||||.|||||||||||||||||    |.|    ||||||||.
RBAM_020460__    351 TGATCATCAAATTGAGCATATGAAGCAGGT----GGTCAGACAAGACGGC    396

BSNT_03323___    397 ATTTGTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGC    446
                     ||||||||||||||||||||||||||||...||||.|||||..|.|||||
RBAM_020460__    397 ATTTGTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGC    446

BSNT_03323___    447 CGATAAGCTGTTT-TATTTCTGGGACAGAAAAGAAAAAAACGGCAGAAAA    495
                     |||.||||||||| |.||| |||||.|||||.||.||.||.|||||||||
RBAM_020460__    447 CGACAAGCTGTTTGTCTTT-TGGGAGAGAAAGGAGAACAATGGCAGAAAA    495

BSNT_03323___    496 TCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGG    545
                     ||||||||.|||||.||.||.|||||..|..|.|.||||||||..|||||
RBAM_020460__    496 TCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGG    545

BSNT_03323___    546 ATACGCACCCAGAATTGATTATATTAGTATTATTGAACAGCTTTATTTTT    595
                     ||||.||||.||||||||||||||||||||||||||||||||||||||||
RBAM_020460__    546 ATACTCACCGAGAATTGATTATATTAGTATTATTGAACAGCTTTATTTTT    595

BSNT_03323___    596 CGCCATCATCTGGTGCGAAAGGTTGA    621
                     |||           ..|||..||.| 
RBAM_020460__    596 CGC-----------AGGAACAGTAG-    609


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