Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03331 and RBAM_020500

See Amino acid alignment / Visit BSNT_03331 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:30
# Commandline: needle
#    -asequence dna-align/BSNT_03331___dnaD.1.9828.seq
#    -bsequence dna-align/RBAM_020500___dnaD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03331___dnaD-RBAM_020500___dnaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03331___dnaD-RBAM_020500___dnaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03331___dnaD
# 2: RBAM_020500___dnaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 700
# Identity:     573/700 (81.9%)
# Similarity:   573/700 (81.9%)
# Gaps:           2/700 ( 0.3%)
# Score: 2345.0
# 
#
#=======================================

BSNT_03331___      1 ATGAAAAAACAGCAATTTATTGATATGCAGGAGCAGGGAACATCAACCAT     50
                     ||||||||||||||||||||.|||||||||||.|..||.|..||||.|||
RBAM_020500__      1 ATGAAAAAACAGCAATTTATAGATATGCAGGAACTCGGCATTTCAAGCAT     50

BSNT_03331___     51 CCCCAATCTTCTGCTTACGCATTATAAACAGCTTGGGCTTAATGAAACAG    100
                     .||.||.||.|||||.||.|||||....|||||||||||.||||||||.|
RBAM_020500__     51 TCCAAACCTGCTGCTGACACATTACCGGCAGCTTGGGCTGAATGAAACCG    100

BSNT_03331___    101 AACTTATTCTGCTGTTAAAAATTAAAATGCATTTAGAAAAAGGATCATAT    150
                     ||.|.||.|||||.||.||.||||||||||||||.|||||.||.||.|||
RBAM_020500__    101 AATTGATCCTGCTTTTGAAGATTAAAATGCATTTGGAAAAGGGCTCTTAT    150

BSNT_03331___    151 TTTCCTACACCGAATCAGCTGCAGGAAGGTATGTCAATTTCTGTTGAAGA    200
                     |||||.||.|||..|.|.||.|||..|||.|||||.||.||||.||||||
RBAM_020500__    151 TTTCCGACGCCGTTTGAACTTCAGTCAGGCATGTCCATCTCTGCTGAAGA    200

BSNT_03331___    201 ATGCACAAACAGATTGCGGATGTTTATTCAAAAAGGCTTTCTGTTTATTG    250
                     |||.||||.|.|..||.|.|||||||||||||||||.|||||||||||||
RBAM_020500__    201 ATGTACAAGCTGCCTGAGAATGTTTATTCAAAAAGGTTTTCTGTTTATTG    250

BSNT_03331___    251 AAGAATGCGAGGATCAAAACGGCATCAAATTTGAGAAATATTCTCTTCAG    300
                     |||||||.||.||.||.||||||||.||.|||||.|||||||||||.|||
RBAM_020500__    251 AAGAATGTGAAGACCATAACGGCATAAAGTTTGAAAAATATTCTCTGCAG    300

BSNT_03331___    301 CCTTTATGGGGGAAGCTGTACGAATATATTCAGCTTGCACAGAATCAAAC    350
                     ||.|||||||.|||||||||.||.||.||.||||.|.||||.||..||||
RBAM_020500__    301 CCGTTATGGGCGAAGCTGTATGATTACATGCAGCATTCACAAAACGAAAC    350

BSNT_03331___    351 ACAGGAAAGAAAAGCAGAAGGGGAACAAAAAAGCCTTTATACCATTTTTG    400
                     .||||||||||...|||||.|.||||||||||||||.||||||||.||||
RBAM_020500__    351 GCAGGAAAGAACGTCAGAAAGAGAACAAAAAAGCCTGTATACCATCTTTG    400

BSNT_03331___    401 AGGAAGAGTTCGCAAGGCCGTTATCGCCTTTGGAGTGTGAAACGCTGGCG    450
                     |.||||||||||.|||.|||.|.|||||..|.||.||.||.||||||||.
RBAM_020500__    401 AAGAAGAGTTCGGAAGACCGCTGTCGCCGCTTGAATGCGAGACGCTGGCC    450

BSNT_03331___    451 ATCTGGCAGGACCAGGATCAGCATGACGCACAACTGATCAAACACGCGTT    500
                     ||.|||||||||||||||||||||||.||....|||||.||||||||.||
RBAM_020500__    451 ATATGGCAGGACCAGGATCAGCATGATGCGATTCTGATTAAACACGCCTT    500

BSNT_03331___    501 AAAAGAGGCTGTACTATCAGGAAAACTCAGTTTCCGCTACATTGACCGCA    550
                     ||||||.||.||..||||.||||||||||||||.|||||.||||||||.|
RBAM_020500__    501 AAAAGAAGCCGTTTTATCGGGAAAACTCAGTTTTCGCTATATTGACCGGA    550

BSNT_03331___    551 TTTTGTTTGAATGGAAGAAAAACGGGCTT-AAAACTGTGGAGCAGGCAAA    599
                     ||||.|||||||||||.||.||| ||||| |||||.||.||.|||||.||
RBAM_020500__    551 TTTTATTTGAATGGAAAAAGAAC-GGCTTCAAAACGGTTGAACAGGCGAA    599

BSNT_03331___    600 AATACACAGCCAAAAATTCCGGCGTGTACAAGCAAAGCAAAATGAACCGC    649
                     ....|||||||||||||||||||||||.|||.||||.||||||||.||||
RBAM_020500__    600 GGCGCACAGCCAAAAATTCCGGCGTGTTCAAACAAAACAAAATGATCCGC    649

BSNT_03331___    650 AAAAAGAGTATAAAAGGCAGGTTCCTTTTTACAATTGGCTTGAACAATAA    699
                     ||||||||||||..||||||||.|||||||||||||||||.|||||||||
RBAM_020500__    650 AAAAAGAGTATACGAGGCAGGTGCCTTTTTACAATTGGCTGGAACAATAA    699


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