Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03343 and RBAM_020590

See Amino acid alignment / Visit BSNT_03343 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence dna-align/BSNT_03343___birA.1.9828.seq
#    -bsequence dna-align/RBAM_020590___birA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03343___birA-RBAM_020590___birA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03343___birA-RBAM_020590___birA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03343___birA
# 2: RBAM_020590___birA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 999
# Identity:     727/999 (72.8%)
# Similarity:   727/999 (72.8%)
# Gaps:          42/999 ( 4.2%)
# Score: 2601.5
# 
#
#=======================================

BSNT_03343___      1 ATGCGGTCAACATTAAGAAAAGACC----TTATTGAATTATTTTCTCAGG     46
                     |||.|.||||||||||||    |||    |.|||||.|||||||||.|||
RBAM_020590__      1 ATGGGATCAACATTAAGA----ACCCGATTAATTGATTTATTTTCTGAGG     46

BSNT_03343___     47 CAGGCAATGAATTTATTTCCGGCCAAAAAATCAGTGATGCTCTCGGCTGT     96
                     |.||..|.|..|||||.|||||.||.|||||.|||||.||.||||||||.
RBAM_020590__     47 CGGGTGACGGCTTTATCTCCGGGCAGAAAATAAGTGACGCGCTCGGCTGC     96

BSNT_03343___     97 TCAAGAACTGCTGTGTGGAAGCATATTGAAGAGCTTCGGAAAGAGGGTTA    146
                     ||.|||||.||.||.|||||.|||||.||.|||||.||.||||||||.||
RBAM_020590__     97 TCGAGAACCGCCGTTTGGAAACATATAGAGGAGCTCCGCAAAGAGGGCTA    146

BSNT_03343___    147 TGAAGTAGAAGCCGTTAGAAGAAAAGGATATCGGCTCATCAAAAAACCCG    196
                     |||.||.||.||.||.||..|||||||.||..|||||||.||||||||.|
RBAM_020590__    147 TGAGGTTGAGGCGGTCAGGCGAAAAGGGTACAGGCTCATTAAAAAACCGG    196

BSNT_03343___    197 GAAAACTCAGTGAAAGCGAAATTCGTTTTGGATTAAAAACGGAAGTGATG    246
                     |.||||||||||||..||||||.|||||.||..|.|||||.||.||..||
RBAM_020590__    197 GGAAACTCAGTGAATCCGAAATCCGTTTCGGGCTGAAAACAGAGGTTTTG    246

BSNT_03343___    247 GGCCAGCATCTTATTTACCATGACGTTCTTTCAAGCACGCAAAAAACGGC    296
                     |||.|.||.|||..|||||..|||||.||..|...|||.||||||||.||
RBAM_020590__    247 GGCAAACAGCTTCATTACCGGGACGTCCTGCCGTCCACCCAAAAAACCGC    296

BSNT_03343___    297 TCATGAGCTCGCGAATAATAACTCACCGGAAGGCACCCTCGTGGTGGCTG    346
                     ||||||.||.||.|||.|...|.|.||||||||.||.|||||.||.||.|
RBAM_020590__    297 TCATGAACTTGCCAATGACGGCGCGCCGGAAGGGACGCTCGTAGTCGCCG    346

BSNT_03343___    347 ACAAACAAACAGCCGGAAGGGGCCGAATGTCTAGGGTATGGCATTCTCAA    396
                     |.||||||||.||.||.||.||..|||||.|.||.|||||||||||.||.
RBAM_020590__    347 ATAAACAAACGGCAGGCAGAGGAAGAATGGCCAGAGTATGGCATTCACAG    396

BSNT_03343___    397 GAAGGAAACGGCGTTTGGATGAGCCTGATTTTGCGGCCTGACATTCCGCT    446
                     ||.||||||||..|||||||||||||.|||.||.|.||.|||.||||..|
RBAM_020590__    397 GAGGGAAACGGGATTTGGATGAGCCTCATTCTGAGACCCGACGTTCCTTT    446

BSNT_03343___    447 CCAAAAAACACCGCAGCTGACTCTGCTTGCTGCAGTAGCTGTTGTGCAGG    496
                     .||||||||.||||||||.||.|||.|..||||.||.||.||.||.||||
RBAM_020590__    447 GCAAAAAACGCCGCAGCTCACCCTGTTATCTGCCGTTGCGGTCGTTCAGG    496

BSNT_03343___    497 GAATAGAAGAGGC----AGCAGGCATCCAAACGGATATTAAATGGCCAAA    542
                     ..||   .|||||    | ||||..|.||..|.|..|||||||||||.||
RBAM_020590__    497 CCAT---CGAGGCTTTTA-CAGGTGTACAGCCCGCCATTAAATGGCCGAA    542

BSNT_03343___    543 TGATATTTTGATTAACGGAAAAAAAACAGTCGGCATCCTAACGGAAATGC    592
                     ||||.|..|||||.||||.||||||.|.|||||.||..||||.||..|||
RBAM_020590__    543 TGATTTAATGATTCACGGCAAAAAAGCCGTCGGGATTTTAACTGAGCTGC    592

BSNT_03343___    593 AGGCTGAAGAAGACCGCGTACGTTCAGTGATCATTGGGATCGGCATTAAC    642
                     ||||.|||||||||||.||.|||||.||.||..|.|||||||||||.|||
RBAM_020590__    593 AGGCAGAAGAAGACCGTGTCCGTTCGGTTATTCTCGGGATCGGCATCAAC    642

BSNT_03343___    643 GTTAACCAGCAG----CCTAATGATTTTCCAGATGAATTGAAGGACATCG    688
                     ||.|||||||||    ||    ||||||||.|..||..|..|||||||.|
RBAM_020590__    643 GTGAACCAGCAGGAAACC----GATTTTCCCGGCGAGCTTCAGGACATTG    688

BSNT_03343___    689 CGACAAGCCTCAGCCAAGCTGCTGGGGAAAAAATTGATCGGGCCGGCGTC    738
                     ||||||||||||||...|..||.||.||.||||||||..|.||.||..|.
RBAM_020590__    689 CGACAAGCCTCAGCATGGAAGCCGGCGAGAAAATTGACAGAGCGGGTCTG    738

BSNT_03343___    739 ATCCAGCATATT----TTACTATGCTTTGAGAAACGGTACCGGGATTATA    784
                     ||.||..|.|||    |.|||    |||||.|||||.||.|.||||||..
RBAM_020590__    739 ATACAAGAGATTCTGCTGACT----TTTGAAAAACGCTATCAGGATTACT    784

BSNT_03343___    785 TGACGCACGGATTTACGCCGATTAAGCTTTTATGGGAAAGCTATGCGCTC    834
                     |||..|||||.|||||.|||||.|||||..|||||||||||||||||.||
RBAM_020590__    785 TGAACCACGGCTTTACACCGATCAAGCTGCTATGGGAAAGCTATGCGGTC    834

BSNT_03343___    835 GGTATTGGCACTAATATGAGAGCCAGAACGTTAAACGGAACCTTTTACGG    884
                     ||..|.||.|...|..|.|||||.||||||.|..|.||.||.||||||||
RBAM_020590__    835 GGACTGGGGAACGAGCTCAGAGCGAGAACGCTGCAAGGGACGTTTTACGG    884

BSNT_03343___    885 GAAGGCGTTAGGTATAGATGATGAAGGCGTTCTGCTTTTAGAAACGAACG    934
                     |||..||.|.||.||.||||||||.||.|||||.||.||.|||||||..|
RBAM_020590__    885 GAAATCGCTCGGCATTGATGATGAGGGAGTTCTTCTCTTGGAAACGAGAG    934

BSNT_03343___    935 AAGGCATTAAAAAAATCTATTCTGCCGATATCGAATTGGGCTAA-----    978
                     |.||.||.||.||.|||||||||||||||     ||||.|||.|     
RBAM_020590__    935 ATGGTATAAAGAAGATCTATTCTGCCGAT-----ATTGAGCTCAATTAA    978


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03343 and RBAM_020590

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
