Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03350 and RBAM_020660

See Amino acid alignment / Visit BSNT_03350 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence dna-align/BSNT_03350.1.9828.seq
#    -bsequence dna-align/RBAM_020660___ypjC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03350-RBAM_020660___ypjC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03350-RBAM_020660___ypjC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03350
# 2: RBAM_020660___ypjC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 888
# Identity:     700/888 (78.8%)
# Similarity:   700/888 (78.8%)
# Gaps:          30/888 ( 3.4%)
# Score: 2751.5
# 
#
#=======================================

BSNT_03350         1 ATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGC     50
                     ||||||||||||||.|||.|.||||||||.|..||||||||||||||.||
RBAM_020660__      1 ATGCTTGGAGAAATCAGAATCAAAAACATTTGCTTTATTTTAATCGGCGC     50

BSNT_03350        51 GGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGG    100
                     .||..||||||||||.||..|||||||.||.|||||||||||||||.|||
RBAM_020660__     51 CGCTGTTTTTTCATTCGGACTGGTTCACTTTAATATGCAGAACAATTTGG    100

BSNT_03350       101 CTGAGGGCGGTTTTACAGGTATTACACTTTTGCTT---TATGCCCTTTTC    147
                     |.||.|||||.|||||.||.|||||.|   |||||   |||||..|.|||
RBAM_020660__    101 CGGAAGGCGGATTTACCGGCATTACGC---TGCTTTTATATGCGTTATTC    147

BSNT_03350       148 CACATCAGCCCCTCTATCTCGAACCTGGTATTGAACATCCCGATTTTTTT    197
                     |||||||||||.|||||.||.|||||||||||||||||.||.||.|||||
RBAM_020660__    148 CACATCAGCCCTTCTATTTCCAACCTGGTATTGAACATTCCTATCTTTTT    197

BSNT_03350       198 TATTGGCTGGCGTTTGCTCGGCAGGACAATGTTTGTTTATACCCTTGTCG    247
                     .||.|||||||||.||||||||.||||.||||||||.||||||||..|||
RBAM_020660__    198 CATCGGCTGGCGTATGCTCGGCCGGACGATGTTTGTCTATACCCTGATCG    247

BSNT_03350       248 GCACTGTAGC-CTTGTCTTTGTTCCTCAGCATCTTTCAGCGATATGAAAT    296
                     ||||.||..| ||| |||.|.||.||.||..|.||||||||.||.|||||
RBAM_020660__    248 GCACCGTCTCTCTT-TCTGTTTTTCTGAGTGTTTTTCAGCGTTACGAAAT    296

BSNT_03350       297 CCATATGCCCCT-TCAGCACGACTTAGCGCTCGCCGCTTTATTTGCCGGC    345
                     .||||||||.|| || |||.||.||||||||.|||||.|||||.|||||.
RBAM_020660__    297 TCATATGCCGCTGTC-GCATGATTTAGCGCTGGCCGCCTTATTCGCCGGT    345

BSNT_03350       346 GTATTCATCGGAGCCGGACTGGGTATTATTTTTAAGTTCGGCGGTACGAC    395
                     |||||.|||||.||.||.||.||.|||||||||||.|.||||||.|||||
RBAM_020660__    346 GTATTTATCGGCGCGGGTCTCGGCATTATTTTTAAATACGGCGGCACGAC    395

BSNT_03350       396 AGGCGGTGTTGATATCATCG-CACGTTTAGTGAATAAGTATTTTGGGATC    444
                     .|||||.||.|||||||||| ||.|.|.| |.||.||.|.|||.||.|||
RBAM_020660__    396 GGGCGGGGTCGATATCATCGCCAGGCTGA-TCAACAAATTTTTCGGAATC    444

BSNT_03350       445 CCGATGGGCAGAACGATGTTTGCTTTCGATGCCTGCGTCATCATTTTG--    492
                     |||||||||.|.|||||||||||.||.||.|||||.|   ||||||||  
RBAM_020660__    445 CCGATGGGCCGGACGATGTTTGCCTTTGACGCCTGTG---TCATTTTGCT    491

BSNT_03350       493 -TCTTTGCTTACTTATCTCTCCTATAAAGAAGCGATGTATACGCTGGTAG    541
                      ||||||.||||.|||||.||.||.||.|||||.|||||.|||||.||||
RBAM_020660__    492 TTCTTTGTTTACGTATCTTTCTTACAAGGAAGCAATGTACACGCTTGTAG    541

BSNT_03350       542 CTGTATTTGTAGCGGCAAGATTAATCGATTTTATTCAGGAAGGCGGATAC    591
                     |.||.|||||.||.||.|||||.||.||||||||.|||||||||||.||.
RBAM_020660__    542 CCGTTTTTGTCGCTGCGAGATTGATTGATTTTATACAGGAAGGCGGCTAT    591

BSNT_03350       592 GCTGCTAAAGGCGCTACGATCATCTCCTCGAAAAACGACCTGATTCAGAA    641
                     ||.||.|||||.||.|||||.||.||.|||||||||||..||||.|||.|
RBAM_020660__    592 GCCGCAAAAGGGGCAACGATTATTTCTTCGAAAAACGATTTGATCCAGCA    641

BSNT_03350       642 AAAGATTCTTGAAGAAATGGAACGTGGCGTCACCATTTTGAAAGGACAAG    691
                     |||.||..|||||||.|||||.||.||||||||..||||.||||||||.|
RBAM_020660__    642 AAAAATCATTGAAGAGATGGAGCGCGGCGTCACTGTTTTAAAAGGACAGG    691

BSNT_03350       692 GTTCCTACACAAAAGAGGATATAGATGTACTTTATTGTGTGGTGCCGAAA    741
                     |.|||||.||||||||.||.|..||.||.|||||.||.||.||.||||||
RBAM_020660__    692 GATCCTATACAAAAGAAGACAGGGACGTTCTTTACTGCGTCGTTCCGAAA    741

BSNT_03350       742 AACGAATTGGTGATGCTGAAAAGCGTGATTAACTCCATTGATCCCCATGC    791
                     ||||||.|.|||.|..||||||||||.||.|..|||.||||.||.||.||
RBAM_020660__    742 AACGAAATTGTGCTTTTGAAAAGCGTCATCACTTCCGTTGACCCGCACGC    791

BSNT_03350       792 CTTTGTAGCGGTAAGCGATGTTCACGATGTGCTCGGAGAAGGATTTACGC    841
                     ||||||.||.||||||||.|||||.|||||||||||.|||||||||||||
RBAM_020660__    792 CTTTGTTGCAGTAAGCGACGTTCATGATGTGCTCGGCGAAGGATTTACGC    841

BSNT_03350       842 TTGATGAAAATAAAAATCCGCTTCCGCGCTGA------    873
                     ||||||||||||||||||||.|      |.||      
RBAM_020660__    842 TTGATGAAAATAAAAATCCGAT------CAGACGATAA    873


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