Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03352 and RBAM_020680

See Amino acid alignment / Visit BSNT_03352 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence dna-align/BSNT_03352___ypjB.1.9828.seq
#    -bsequence dna-align/RBAM_020680___ypjB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03352___ypjB-RBAM_020680___ypjB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03352___ypjB-RBAM_020680___ypjB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03352___ypjB
# 2: RBAM_020680___ypjB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 828
# Identity:     570/828 (68.8%)
# Similarity:   570/828 (68.8%)
# Gaps:          78/828 ( 9.4%)
# Score: 1872.5
# 
#
#=======================================

BSNT_03352___      1 ATGAAACGAAAGCTGACGATCTGTTTGTTGATTGCACTTA--TTTTTTAT     48
                     ||||||||||||||||||||||||.|.||..||||.||||  |.|||.||
RBAM_020680__      1 ATGAAACGAAAGCTGACGATCTGTCTTTTACTTGCTCTTATGTGTTTCAT     50

BSNT_03352___     49 AATGGAAATGCCAAGGCTGCAGAGCGGGGAAGCCTCGAGGAATTGAATGA     98
                     .|  .||.||||||.||||.|||...|||..|.|||.|||||.||||.||
RBAM_020680__     51 CA--CAACTGCCAAAGCTGAAGATGAGGGCGGTCTCAAGGAACTGAACGA     98

BSNT_03352___     99 TTTATCCGATACAGTCTTTCAAATGACCCGACAGGCAAAATATGAAGAGG    148
                     ..|.||.|||||.||.||.||||||||.||.||..|..|.|||||.||||
RBAM_020680__     99 CCTTTCGGATACCGTTTTCCAAATGACGCGGCATTCGCAGTATGATGAGG    148

BSNT_03352___    149 CGCTTCAAGT-CTTGGAGTATTTT--GAAAAAACAT--------TAAAAT    187
                     |.||.||||| ||||| .||.|||  ||||||| ||        ||||.|
RBAM_020680__    149 CTCTGCAAGTGCTTGG-CTACTTTAAGAAAAAA-ATGACACACGTAAACT    196

BSNT_03352___    188 CCGCTGAGAAAAAACAGCAAGACCCCATGCTAACGG-GATCCCAAATCCG    236
                      |.|||||                         ||| |  ||.||.||.|
RBAM_020680__    197 -CACTGAG-------------------------CGGCG--CCGAAGTCAG    218

BSNT_03352___    237 TCAAATCACATTGGGCTATAATGATATGGTTCGGAGTT-TAAAGCAAGCT    285
                     .||..|.||..||||.|..||||||.|.||.| |.||| |.||.||.||.
RBAM_020680__    219 GCAGGTGACTCTGGGTTTCAATGATTTAGTGC-GCGTTCTGAAACAGGCA    267

BSNT_03352___    286 GATACATCAGACACACAAAAACTCAGAGCAGCCGCGCAGTTCAGGATGCT    335
                     ||..|.|||||.||..|||||.||.|.||||||||.|||||||||.||.|
RBAM_020680__    268 GACGCCTCAGATACCGAAAAAATCCGGGCAGCCGCCCAGTTCAGGTTGGT    317

BSNT_03352___    336 GATGGATGCGGTTGAAAATCGGTCTGACCCGCTTTGGGGCTCACTGGAAA    385
                     .|||||||||.|.|||.|.|..||.||.|||||.|||||.||.||.||||
RBAM_020680__    318 AATGGATGCGATGGAAGACCACTCCGATCCGCTGTGGGGTTCGCTTGAAA    367

BSNT_03352___    386 AACCGATTATGGAAGCTTTTA----CTGAACTGAAGCGAGATGTCCAAAA    431
                     .|||||||||||...|.||.|    ||.||..||    |||||||    |
RBAM_020680__    368 GACCGATTATGGCGACATTCAGCGCCTTAAAAGA----AGATGTC----A    409

BSNT_03352___    432 G----AATGGAAG-CACAAGCTTTC-ATGAAAAATGGAATGAATT--TAT    473
                     |    ||.||||| .|.||  |||| |||||||.|||||||||||  |||
RBAM_020680__    410 GCGGAAACGGAAGTGAAAA--TTTCAATGAAAAGTGGAATGAATTTATAT    457

BSNT_03352___    474 CAGTTTATATGACTTGATTTACCCCAGTCTTACAATCGATGTATCAGAGG    523
                     ||  ||||||||.||.|||||.|||||.||.|||||.|||||.||.|..|
RBAM_020680__    458 CA--TTATATGATTTAATTTATCCCAGCCTGACAATGGATGTGTCGGCCG    505

BSNT_03352___    524 ATCAGCTTGAAACAGTCGGAAAACATATAGACGTTATTGAGCAAGAGGAA    573
                     ..||||||||.||.||.|..||||||||.||.||.||||||||.||.|..
RBAM_020680__    506 GCCAGCTTGATACGGTGGCGAAACATATCGAGGTGATTGAGCAGGACGGG    555

BSNT_03352___    574 TTTCAGCAAATGACAGAGAGCACGAAGCTTGAACGGCTTTCCCTTCTTCA    623
                     ||||||||.||||||.|..|.||.||||||||.||.||..|.||.||.||
RBAM_020680__    556 TTTCAGCAGATGACAAAAGGAACAAAGCTTGAGCGTCTGACGCTCCTGCA    605

BSNT_03352___    624 GCATGACCTGAAAAATGTGTTTGACAGGGTGGAGGAGGATGATGCCGATC    673
                     |||.||..|.||....||.|||||||.|||||||..||||||.||.||.|
RBAM_020680__    606 GCAGGATTTAAAGCGGGTTTTTGACAAGGTGGAGCGGGATGACGCTGACC    655

BSNT_03352___    674 CGTCTTTACTCTGGGTGATGATTACAACCGGCAGTATCATCATTACTGCT    723
                     |.||..|.||||||||.||..|.|||||.|||.|||||||.||||||||.
RBAM_020680__    656 CTTCGCTGCTCTGGGTCATTCTGACAACAGGCGGTATCATTATTACTGCG    705

BSNT_03352___    724 CTTACCTATGTCGGTTACAGAAAGTACAAGGCGGAAAAAAACAAGCTGAA    773
                     ||.||.||||||||.|||.||||.||||..|||||||||||.||...|||
RBAM_020680__    706 CTGACATATGTCGGCTACCGAAAATACAGAGCGGAAAAAAAGAAAGAGAA    755

BSNT_03352___    774 AAAAAGGGACTACC------CTAAATAA    795
                     |||..|.||.||.|      ||||||||
RBAM_020680__    756 AAAGCGTGAGTATCCTAAGTCTAAATAA    783


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03352 and RBAM_020680

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
