Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03357 and RBAM_020730
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:33
# Commandline: needle
# -asequence dna-align/BSNT_03357___ypiF.1.9828.seq
# -bsequence dna-align/RBAM_020730___ypiF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03357___ypiF-RBAM_020730___ypiF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03357___ypiF-RBAM_020730___ypiF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03357___ypiF
# 2: RBAM_020730___ypiF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 496
# Identity: 323/496 (65.1%)
# Similarity: 323/496 (65.1%)
# Gaps: 98/496 (19.8%)
# Score: 1028.5
#
#
#=======================================
BSNT_03357___ 1 ATGAGGTGGAGAATCACTGATGCCAAGGACTATTTACAAGCTAAGGATTA 50
|||||.|||||...|.||||||||.|.|.||||||||||.||..||||||
RBAM_020730__ 1 ATGAGATGGAGGGCCGCTGATGCCGATGCCTATTTACAATCTGCGGATTA 50
BSNT_03357___ 51 CATTGATACCGCTGTCATACCATTAATTAACATAAGGGTTAATAACCAT- 99
||||||||||||||||||.||.||||||..||||| |||
RBAM_020730__ 51 CATTGATACCGCTGTCATTCCGTTAATTTCCATAA-----------CATC 89
BSNT_03357___ 100 ---------TTTAAAATGGCGGC----------GGAGAAAGGCGAGTTTA 130
.|||||| |.||| ||.||||| .|
RBAM_020730__ 90 TTCAGGAGGCTTAAAA--GAGGCCGTTGAACAGGGGGAAAG-------CA 130
BSNT_03357___ 131 CGCAGCTTCTCTCAGAAGAACTTGAAAGGCAGTTAAAGGGACGGGTATAT 180
|.||..|.||.||.|||||.|||||..|.||.||.|||||||||||||||
RBAM_020730__ 131 CCCAATTGCTTTCTGAAGAGCTTGAGCGCCAATTGAAGGGACGGGTATAT 180
BSNT_03357___ 181 TTACTTCCGC-CTTATACATATGTTGATAGA----AATGAAATAACCG-- 223
||| ||||.| ||||||||||||||||||.| |||.|.| ||.||
RBAM_020730__ 181 TTA-TTCCCCTCTTATACATATGTTGATATAGACCAATCACA-AATCGCC 228
BSNT_03357___ 224 ----TTCAAGGGCTTAAGGATTTGCGGGAAGAGCTGATAACGGAATTTCC 269
|||||...||.|| .||.|||.||||.||..|.||||.
RBAM_020730__ 229 CTGCTTCAAAAACTCAA---------AGACGAGGTGATGACCAACTTTCG 269
BSNT_03357___ 270 GCA--TGTTG-TCCTGCTCACATCTGACGAAAGTTGGAGAGCTGAGGATG 316
||| |.||| ||||| ||..|.|||||||..|||| |||||.
RBAM_020730__ 270 GCACGTCTTGTTCCTG---ACGGCAGACGAAAAATGGA------AGGATT 310
BSNT_03357___ 317 CGT----TAGG--CAAAATGATTGT----TAC--ACCGTCTGTTCCATTA 354
| | |||| | ||| ||| ||| |||..|.|||||.||.
RBAM_020730__ 311 C-TGAAATAGGTTC----TGA-TGTCATATACATACCTGCCGTTCCGTTT 354
BSNT_03357___ 355 GAGCATTTAAATGACTCTTTAAAAAGAAAAATATTGGATGAACGC-ACTG 403
||.|||.|.||.|||||||||||.||||||||...|||||| | |.||
RBAM_020730__ 355 GAACATATGAAAGACTCTTTAAAGAGAAAAATTGCGGATGA---CAAGTG 401
BSNT_03357___ 404 C--TGAAATTTTGAACGTTTTGTTACAGTTATGGAGCACTTCATAA 447
| .||||||||||||||||||||||||...||||.||.|||||||
RBAM_020730__ 402 CGGAGAAATTTTGAACGTTTTGTTACAGAAGTGGAACAATTCATAA 447
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