Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03363 and RBAM_020770
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:33
# Commandline: needle
# -asequence dna-align/BSNT_03363___tyrA.1.9828.seq
# -bsequence dna-align/RBAM_020770___tyrA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03363___tyrA-RBAM_020770___tyrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03363___tyrA-RBAM_020770___tyrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03363___tyrA
# 2: RBAM_020770___tyrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1162
# Identity: 826/1162 (71.1%)
# Similarity: 826/1162 (71.1%)
# Gaps: 101/1162 ( 8.7%)
# Score: 2849.5
#
#
#=======================================
BSNT_03363___ 1 ATGAATCAAATGAAAGATACAATATTGCTCGCCGGTCTCGGATTGATAGG 50
|||||.|||||.||||||||.||.||..||||..||||.||
RBAM_020770__ 1 ---------ATGAAGGATACTATATTGCTTGCGGGGATCGGGCTGATCGG 41
BSNT_03363___ 51 CGGTTCGATTGCCCTAGCCATCAAAAAAAATCATCCCGGC--AAACGGAT 98
|||.|||||.||.||.|||||||||||..|.||||| || ||||||||
RBAM_020770__ 42 CGGATCGATCGCACTGGCCATCAAAAAGGAGCATCC--GCATAAACGGAT 89
BSNT_03363___ 99 TATCGGAATCGATATCTCTGATGAACAG-----------GCGGTAG--CG 135
||||||..|.|||||.||.||.|||||| ||.|.|| ||
RBAM_020770__ 90 TATCGGTGTGGATATTTCGGAAGAACAGCTCACTGCCGCGCTGAAGCTCG 139
BSNT_03363___ 136 GCATTAAAATTAGGCGTGATAGACGATCGTGCTGATTCGTTTATTAGCGG 185
|.||| ||.|||||.||.||.|..||.|||| ||
RBAM_020770__ 140 GAATT-------------ATTGACGAGCGGGCCGGCTCATTTA----CG- 171
BSNT_03363___ 186 TGCGAAAGAG-GCAGCTA----CAGTAATCATT---GCGACACCTGTTGA 227
|||.|.| |||||.| |.||..||||| ||.||.|||||.|.
RBAM_020770__ 172 ---GAAGGTGTGCAGCAAGCGTCTGTTGTCATTATCGCCACGCCTGTCGC 218
BSNT_03363___ 228 ACAAACACTGGTTATGCTTGAAGAGCTGG-CTCATTCAGGAATTGAACAT 276
.|||||.|||...|||||.||.|.||||| |.|| ||||..||....|||
RBAM_020770__ 219 CCAAACGCTGAAAATGCTCGATGTGCTGGCCGCA-TCAGACATCACCCAT 267
BSNT_03363___ 277 GAGCTTTTGATTACGGATGTAGGAAGCACAAAGCAAAAAGTGGTTGATTA 326
||.||..|||||||||||||.||.|||||.||.||.|||||.||....||
RBAM_020770__ 268 GAACTCCTGATTACGGATGTGGGCAGCACGAAACAGAAAGTCGTCAGCTA 317
BSNT_03363___ 327 CGCTGATCAAGTGCTGCCTAGC-CGCTATCAATTTGTCGGAGGGCATCCG 375
|||.||..|||||||.|| .|| |.|||||||||||||||.||.||||||
RBAM_020770__ 318 CGCCGACAAAGTGCTTCC-GGCTCACTATCAATTTGTCGGCGGCCATCCG 366
BSNT_03363___ 376 ATGGCGGGTTCACATAAATCAGGAGTGGCCGCT---GCGAAGGAGTTCCT 422
||||||||.||.||||||||.|| ||||||| |||||.||.||..|
RBAM_020770__ 367 ATGGCGGGATCTCATAAATCCGG---GGCCGCTGCCGCGAAAGAATTTTT 413
BSNT_03363___ 423 GTTTGAAAATGCATTTTATATTTTAACGCCAGGCCAGAAAACGGACAAAC 472
.||.||||||||.|||||.||||||||.|| ||||.||.|
RBAM_020770__ 414 ATTCGAAAATGCGTTTTACATTTTAACACC-----------CGGAAAATC 452
BSNT_03363___ 473 AAGCTGTGGAACAGT---TAA--------AA--AAC-CTGCTGAAGGGGA 508
|| ||....||.||| ||| || ||| || ||||.|.|.
RBAM_020770__ 453 AA-CTTCTAAAGAGTCAGTAATGCATCTGAAGGAACTCT--TGAAAGCGG 499
BSNT_03363___ 509 CGAATGCCCATTTTGTGGAAATGTCGCCAGAGGAGCATGATGGTGTTACA 558
|.||.|||||.||||||||.|||.|.||.|||||||||||.||.||.||.
RBAM_020770__ 500 CAAACGCCCACTTTGTGGAGATGACTCCCGAGGAGCATGACGGCGTAACG 549
BSNT_03363___ 559 AGTGTAATCAGTCATTTTCCGCATATTGTAGCAGCCAGTCTTGTTCACCA 608
||.||.|||||.|||||.||.|||||.||.||.||.||.||.||.||.||
RBAM_020770__ 550 AGCGTCATCAGCCATTTCCCTCATATCGTTGCTGCAAGCCTCGTACATCA 599
BSNT_03363___ 609 AACCCATCATTCGGAA-AACCTGTATCCGCTTGTTAAGCGTTTTGCTGCC 657
..|.||||||.|.||| ||..| ||||||.||.|.||.||||||||.|||
RBAM_020770__ 600 GGCTCATCATGCTGAAGAAGAT-TATCCGTTTTTGAAACGTTTTGCAGCC 648
BSNT_03363___ 658 GGCGGATTCAGAGATATTACAAGGATTGCATCAAGCAGCCCGGCAATGTG 707
|||||.||..|.||.||.||.|||||.||.||||||||.|||||.|||||
RBAM_020770__ 649 GGCGGTTTTCGGGACATCACCAGGATCGCCTCAAGCAGTCCGGCGATGTG 698
BSNT_03363___ 708 GCGGGATAT-TTTATTACATAATAAAGATAAAAT-CTTAGACCGTTTTGA 755
|.||||.|| .||.|| |||||.|||||||||.| ||| |||||.||..|
RBAM_020770__ 699 GAGGGACATACTTCTT-CATAACAAAGATAAACTGCTT-GACCGCTTCAA 746
BSNT_03363___ 756 TGAGTGGATTCGTGAAATTGACAAGATCCGTA-CATATGTAGAACAAGAA 804
.||.||||..||.||.|||||||.||| ||.| |.|||||||||.|.|||
RBAM_020770__ 747 AGAATGGAAACGGGAGATTGACACGAT-CGAATCTTATGTAGAAAATGAA 795
BSNT_03363___ 805 GATGCGGAAAATCTATTTCGTTATTTTAAAACCGCCAAGGATTATCGCGA 854
||||||||.|..||.||..|.||||||||||..||.||.|||||||||||
RBAM_020770__ 796 GATGCGGACAGCCTGTTCGGATATTTTAAAAAAGCGAAAGATTATCGCGA 845
BSNT_03363___ 855 CGGGCTGCCGCTTCGGCAGAAGGGAGCGATACCTGCATTTTATGATTTAT 904
|||.||||||||.||.||.||.||||||||.||..|.|||||||||.|.|
RBAM_020770__ 846 CGGTCTGCCGCTCCGTCAAAAAGGAGCGATCCCGTCCTTTTATGATCTTT 895
BSNT_03363___ 905 ATGTGGATGTACCCGATCATCCGGGTGTAATATCCGAGATAACAGCGATC 954
||||.|||||.||||||||||||||.||.||.||.||.||.||.|||||.
RBAM_020770__ 896 ATGTCGATGTTCCCGATCATCCGGGGGTCATTTCGGAAATTACGGCGATA 945
BSNT_03363___ 955 TTAGCTGCGGAGCGCATCAGTATCACGAATATCCGCATTATCGAAACACG 1004
||.||.|..||....|||||||||||.||.||||||||||||||||||.|
RBAM_020770__ 946 TTGGCAGAAGAAAAAATCAGTATCACCAACATCCGCATTATCGAAACAAG 995
BSNT_03363___ 1005 AGAGGATATTAACGGGATTTTAAGGATCAGTTTTCAGTCTGATGACGACC 1054
|||.|||||||||||.|||.|.||.||||||||.|||.|||||||.||||
RBAM_020770__ 996 AGAAGATATTAACGGAATTCTCAGAATCAGTTTCCAGACTGATGATGACC 1045
BSNT_03363___ 1055 GCAAAAGGGCAGAACAATGCATTGAAGCCCGGGCGGAATATGAAACTTTT 1104
|.||..|.||.|||...||||||.||.||||.||..|||||||.||.|||
RBAM_020770__ 1046 GGAAGCGTGCGGAAACCTGCATTCAATCCCGCGCCAAATATGACACATTT 1095
BSNT_03363___ 1105 TATGCTGATTGA 1116
||.|||||.|||
RBAM_020770__ 1096 TACGCTGACTGA 1107
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