Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03395 and RBAM_021000

See Amino acid alignment / Visit BSNT_03395 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:37
# Commandline: needle
#    -asequence dna-align/BSNT_03395___engA.1.9828.seq
#    -bsequence dna-align/RBAM_021000___engA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03395___engA-RBAM_021000___engA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03395___engA-RBAM_021000___engA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03395___engA
# 2: RBAM_021000___engA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1313
# Identity:    1112/1313 (84.7%)
# Similarity:  1112/1313 (84.7%)
# Gaps:           4/1313 ( 0.3%)
# Score: 4732.0
# 
#
#=======================================

BSNT_03395___      1 ATGGGTAAACCTGTCGTAGCCATTGTCGGGAGACCAAATGTAGGAAAATC     50
                     |||||||||||||||||||||||||||||.|||||.|||||.||||||||
RBAM_021000__      1 ATGGGTAAACCTGTCGTAGCCATTGTCGGAAGACCGAATGTGGGAAAATC     50

BSNT_03395___     51 CACAATCTTTAACCGGATTGCGGGAGAAAGAATTTCAATAGTAGAAGATA    100
                     ||||||||||||||||||||||||.|||||||||||||||||||||||||
RBAM_021000__     51 CACAATCTTTAACCGGATTGCGGGTGAAAGAATTTCAATAGTAGAAGATA    100

BSNT_03395___    101 CCCCTGGCGTGACAAGGGATCGGATATACAGCTCGGCTGAATGGCTGAAT    150
                     ||||.||.|||||..||||.|||||||||||.|||||.||||||||||||
RBAM_021000__    101 CCCCCGGAGTGACGCGGGACCGGATATACAGTTCGGCGGAATGGCTGAAT    150

BSNT_03395___    151 TATGATTTTAATTTGATTGATACGGGCGGTATTGATATCGGTGATGAGCC    200
                     |||||||||||..||||||||||||||||.|||||||||||.||.||.||
RBAM_021000__    151 TATGATTTTAACCTGATTGATACGGGCGGAATTGATATCGGAGACGAACC    200

BSNT_03395___    201 G-TTCTTAGCGCAGATTCGCCAGCAGGCTGAAATCGCCATGGATGAAGCG    249
                     | ||||.| |.|||||.||||||||||||||||||||||||||.||.||.
RBAM_021000__    201 GTTTCTGA-CACAGATCCGCCAGCAGGCTGAAATCGCCATGGACGAGGCT    249

BSNT_03395___    250 GACGTGATTATTTTTATGGTGAACGGCCGTGAAGGTGTGACAGCTGCTGA    299
                     ||.|||||.||.|||||||||||||||||.||||||||.||..||||.||
RBAM_021000__    250 GATGTGATCATCTTTATGGTGAACGGCCGCGAAGGTGTTACGTCTGCGGA    299

BSNT_03395___    300 TGAAGAAGTGGCGAAAATTTTGTACCGCACAAAAAAGCCTGTTGTTTTAG    349
                     ||||||||||||||||||..|||||||.||.|||||.||.||.||.||||
RBAM_021000__    300 TGAAGAAGTGGCGAAAATACTGTACCGGACGAAAAAACCGGTCGTATTAG    349

BSNT_03395___    350 CGGTTAATAAACTGGATAACACAGAAATGAGAGCGAATATTTATGATTTT    399
                     |.|||||||||.|.|||||.||.||||||||||||||.||.|||||.|||
RBAM_021000__    350 CCGTTAATAAATTAGATAATACCGAAATGAGAGCGAACATCTATGACTTT    399

BSNT_03395___    400 TATTCGCTAGGCTTTGGCGAGCCGTATCCAATTTCGGGAACACACGGACT    449
                     |||.||||.||||||||.||.||||||||.||||||||.||||||||..|
RBAM_021000__    400 TATGCGCTCGGCTTTGGAGAACCGTATCCGATTTCGGGCACACACGGTTT    449

BSNT_03395___    450 CGGACTGGGTGATTTACTGGATGCCGTTGCAGAGCATTTTAAAAACATTC    499
                     .|||.||||.|||||.||.|||||...|||.|||||||||||||||||||
RBAM_021000__    450 AGGATTGGGAGATTTGCTCGATGCTTGTGCCGAGCATTTTAAAAACATTC    499

BSNT_03395___    500 CAGAAACGAAATACAATGAGGAAGTTGTTCAATTCTGTCTGATCGGACGT    549
                     |.||.|||||.||||.|||.||.||.|||||||||||.||||||||.||.
RBAM_021000__    500 CGGAGACGAAGTACAGTGATGATGTCGTTCAATTCTGCCTGATCGGCCGC    549

BSNT_03395___    550 CCGAATGTCGGAAAGTCTTCACTTGTGAATGCGATGCTCGGCGAAGAACG    599
                     ||||||||||||||.||.||.|||||.||||||||||||||||||||.||
RBAM_021000__    550 CCGAATGTCGGAAAATCATCCCTTGTCAATGCGATGCTCGGCGAAGAGCG    599

BSNT_03395___    600 CGTTATTGTCAGCAACGTGGCTGGAACGACAAGAGATGCTGTTGATACGT    649
                     .|||||.||.||||||||.||.||||||||.|||||.|||||.||||||.
RBAM_021000__    600 GGTTATCGTGAGCAACGTAGCCGGAACGACTAGAGACGCTGTGGATACGG    649

BSNT_03395___    650 CATTTACTTACAACCAGCAGGAGTTTGTCATTGTCGATACTGCAGGTATG    699
                     |.||.||.|||||.||||||||.|||||.||.||.||.||.||.||.|||
RBAM_021000__    650 CGTTCACCTACAATCAGCAGGAATTTGTAATCGTTGACACGGCGGGAATG    699

BSNT_03395___    700 CGAAAAAAAGGGAAAGTCTATGAAACGACTGAGAAGTATAGTGTACTGCG    749
                     .|||||||.||.|||||.||||||||.||.||.||.||.|||||.||.||
RBAM_021000__    700 AGAAAAAAGGGTAAAGTATATGAAACAACAGAAAAATACAGTGTGCTTCG    749

BSNT_03395___    750 GGCGCTAAAAGCGATTGACCGCTCAGAAGTCGT-GGCGGTTGTGCTGGAT    798
                     ||||.|||||||.||||||||||||||.||||| ||| |||||||||.||
RBAM_021000__    750 GGCGTTAAAAGCCATTGACCGCTCAGACGTCGTCGGC-GTTGTGCTGAAT    798

BSNT_03395___    799 GGCGAAGAAGGCATTATTGAACAGGACAAGCGTATCGCCGGTTATGCACA    848
                     |..|||||||||||..||||.|||||||||||.||||||||.||.||.||
RBAM_021000__    799 GCAGAAGAAGGCATCCTTGAGCAGGACAAGCGGATCGCCGGATACGCCCA    848

BSNT_03395___    849 CGAAGCGGGCAAGGCCGTCGTCATCGTCGTAAACAAATGGGATGCTGTTG    898
                     .|||||.||.||.|||||||||||..|||||||||||||||||||.||||
RBAM_021000__    849 TGAAGCCGGGAAAGCCGTCGTCATTATCGTAAACAAATGGGATGCCGTTG    898

BSNT_03395___    899 ACAAAGATGAGAGCACAATGAAAGAATTTGAAGAAAATATTCGCGATCAT    948
                     |.|||||.|||.||||.|||||||||||||||.|.||||||||.||.|||
RBAM_021000__    899 ATAAAGACGAGCGCACGATGAAAGAATTTGAACAGAATATTCGGGAACAT    948

BSNT_03395___    949 TTTCAATTTCTGGATTATGCGCCAATCCTATTTATGTCTGCCTTAACGAA    998
                     ||.||||||||.|||||.|||||..|.||.||||||||.||..|.||||.
RBAM_021000__    949 TTCCAATTTCTCGATTACGCGCCGGTGCTGTTTATGTCGGCACTGACGAC    998

BSNT_03395___    999 AAAACGGATCCATACGCTGATGCCTGCGATTATTAAAGCAAGTGAAAATC   1048
                     |||.|||||.|||||.||.||||||||||||||||||||.||||||||.|
RBAM_021000__    999 AAAGCGGATTCATACACTCATGCCTGCGATTATTAAAGCGAGTGAAAACC   1048

BSNT_03395___   1049 ATTCACTTCGAGTTCAGACGAACGTCTTAAATGATGTCATCATGGATGCT   1098
                     |.||.||.||.||.|||||.||.|||||||||||||||||.||||||||.
RBAM_021000__   1049 ACTCTCTCCGCGTGCAGACAAATGTCTTAAATGATGTCATTATGGATGCG   1098

BSNT_03395___   1099 GTGGCAATGAACCCGACACCGACTCATAACGGTTCTCGTTTGAAAATTTA   1148
                     ||.||.|||||.||.||.|||||.||.|||||.||.|||.||||||||||
RBAM_021000__   1099 GTCGCCATGAATCCAACTCCGACGCACAACGGCTCCCGTCTGAAAATTTA   1148

BSNT_03395___   1149 CTATGCGACTCAAGTGTCGGTAAAGCCGCCAAGCTTCGTTGTGTTTGTAA   1198
                     .||||||||||||||..|.||.||||||||.|||||||||||.|||||.|
RBAM_021000__   1149 TTATGCGACTCAAGTCGCTGTTAAGCCGCCGAGCTTCGTTGTTTTTGTCA   1198

BSNT_03395___   1199 ACGATCCGGAATTGATGCATTTTTCATACGAACGGTTTTTAGAAAACCGA   1248
                     |||||||||||.|||||||||||||.||.|||||.|||||||||||||||
RBAM_021000__   1199 ACGATCCGGAACTGATGCATTTTTCTTATGAACGCTTTTTAGAAAACCGA   1248

BSNT_03395___   1249 ATCAGAGACGCGTTCGGTTTTGAGGGGACACCAATCAAAATATTTGCAAG   1298
                     |||.|.|||||.|||||.|||||.||.||.|||||.||||||||||||||
RBAM_021000__   1249 ATCCGGGACGCTTTCGGATTTGAAGGTACGCCAATTAAAATATTTGCAAG   1298

BSNT_03395___   1299 AGCTAGAAAATAA   1311
                     |||.|||||||||
RBAM_021000__   1299 AGCAAGAAAATAA   1311


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