Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03403 and RBAM_021020

See Amino acid alignment / Visit BSNT_03403 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:37
# Commandline: needle
#    -asequence dna-align/BSNT_03403___ypgA.1.9828.seq
#    -bsequence dna-align/RBAM_021020___fni.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03403___ypgA-RBAM_021020___fni.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03403___ypgA-RBAM_021020___fni.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03403___ypgA
# 2: RBAM_021020___fni
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1074
# Identity:     784/1074 (73.0%)
# Similarity:   784/1074 (73.0%)
# Gaps:          48/1074 ( 4.5%)
# Score: 2719.0
# 
#
#=======================================

BSNT_03403___      1 GTGACTCGAGCAGAACGAAAAAGACAACACATCAATCATGCCTTGTCCAC     50
                     |||||.||||||||||||||||||.||||.||.||||||||..||||.||
RBAM_021020__      1 GTGACACGAGCAGAACGAAAAAGAGAACATATAAATCATGCGCTGTCTAC     50

BSNT_03403___     51 CGGCCAGAAGCGGGAAACAGGTCTTGATGATATTACGTTTGTTCACGTCA    100
                     ||||||.||.||||||||.||.|||||||||||||||||||||||.||||
RBAM_021020__     51 CGGCCAAAACCGGGAAACGGGGCTTGATGATATTACGTTTGTTCATGTCA    100

BSNT_03403___    101 GTCTGCCCGATCTTGCATTAGAACAAGTAGATATTTCCACGAAAATCGGC    150
                     |.||.||..|.||.|||||.|||.||||.|||||.||.||||||||||||
RBAM_021020__    101 GCCTACCGAACCTAGCATTGGAAAAAGTGGATATATCAACGAAAATCGGC    150

BSNT_03403___    151 GAACTTTCAAGCAGTTCGCCGATTTTTATCAATGCAATGACTGGCGGCGG    200
                     |.|||..||||||||||||||||||||||||||||.|||||.||||||||
RBAM_021020__    151 GGACTCACAAGCAGTTCGCCGATTTTTATCAATGCGATGACAGGCGGCGG    200

BSNT_03403___    201 CGGAAAACTTACATATGAGATTAATAAATCGCTTGCGCGAGCGGCTTATC    250
                     ||||.|.||||||||.||.|||||.|.||||||.||..||||.||.....
RBAM_021020__    201 CGGACAGCTTACATACGAAATTAACAGATCGCTGGCAAGAGCTGCGCGCA    250

BSNT_03403___    251 AGGCTGGAATTCCCCTTGCTGTGGGATCGCAAATGTCAGCATTAAAAGAT    300
                     |.||.||.||.||.||.|||||.||.||||||||||||||.|||||||||
RBAM_021020__    251 AAGCCGGCATGCCGCTGGCTGTCGGTTCGCAAATGTCAGCTTTAAAAGAT    300

BSNT_03403___    301 CCATCAGAGC-GTCTATCCTATGAAATTGTTCGAAAGGAAAACCCAAACG    349
                     ||.||.||.| ||.| ||.|||||.||.||..||||.||.||.||..|||
RBAM_021020__    301 CCCTCCGAACGGTGT-TCTTATGAGATCGTCAGAAAAGAGAATCCGGACG    349

BSNT_03403___    350 GGCTGATTTTTGCCAACCTGGGAAGCGAGGCAACGGCTGC---TCAGGCA    396
                     |||||||.||||||||..|.||.|||||||   |||.|||   .|||||.
RBAM_021020__    350 GGCTGATATTTGCCAATTTAGGCAGCGAGG---CGGATGCCGAGCAGGCG    396

BSNT_03403___    397 AAGGAA--GCTGTTGAGATGATTGGAGCAAACGCACTGCAGATCCACCTC    444
                     ||  ||  ||.|||||.||||||..||||.||||.||.|||||.||..|.
RBAM_021020__    397 AA--AATGGCAGTTGATATGATTCAAGCAGACGCCCTCCAGATTCATTTA    444

BSNT_03403___    445 AATGTGATTCAGGAAATTGTGATGCCTGAAGGAGACAGAAGCTTTAGCGG    494
                     ||||||||||||||.||.||.|||||.||.||.|||||||||||||..||
RBAM_021020__    445 AATGTGATTCAGGAGATCGTCATGCCAGAGGGTGACAGAAGCTTTACTGG    494

BSNT_03403___    495 CGCACTGGAACGTATTGAACAAATT--TGCAGTCATGTCAGTGTACCAGT    542
                     |||.||.|..||||||||.|..|||  .||.|  |.|...|.||.||.||
RBAM_021020__    495 CGCTCTCGGCCGTATTGAGCGGATTGCGGCGG--AAGCGGGAGTTCCCGT    542

BSNT_03403___    543 CATTGTGAAAGAAGTCGGATTCGGTATGAGCAAAGAATCAGCAGGAAAGC    592
                     ..||||.|||||||||||.|||||.|||||||..|||||.|||.|..||.
RBAM_021020__    543 TTTTGTCAAAGAAGTCGGCTTCGGAATGAGCAGGGAATCGGCACGGCAGT    592

BSNT_03403___    593 TGTATGAAGCTGGTGCTGCAGCTGTTGACATTGGCGGTTACGGAGGGACA    642
                     |.|.|||.|||||.||.|||||.|||||....|||||.|||||.||.|||
RBAM_021020__    593 TATTTGATGCTGGCGCAGCAGCAGTTGATGCCGGCGGATACGGCGGTACA    642

BSNT_03403___    643 AATTTCTCGAAAATCGAAAATCTCCGAAGACA----GCGGAAAATCTCC-    687
                     ||||||||.||.|||||||||.|.||.|||.|    |||      ||.| 
RBAM_021020__    643 AATTTCTCTAAGATCGAAAATATGCGCAGAGAGAAGGCG------CTTCA    686

BSNT_03403___    688 -TTTTTTAACTCGTGGGGCATTTCGACAGCTGCCAGTTTGGCGGAAATC-    735
                      ||||||||..|||||||.|||||.||.||.||.||.||.||||||||| 
RBAM_021020__    687 ATTTTTTAATACGTGGGGAATTTCCACTGCCGCAAGCTTAGCGGAAATCC    736

BSNT_03403___    736 ---CGCTCTGAGTTTCCTG--CAAGCACCATGATCGCCTCTGGCGGTCTG    780
                        ||||||..|    |||  |||.||  ||.|||||.||.|||||.|||
RBAM_021020__    737 ACTCGCTCTCCG----CTGATCAATCA--ATTATCGCATCCGGCGGGCTG    780

BSNT_03403___    781 CAAGATGCACTTGACGTGGCAAAGGCAATTGCGCTTGGGGCCTCTTGCAC    830
                     |||..|||.||.||.||.||.||..|.|||||.||.||.||.||..||.|
RBAM_021020__    781 CAAAGTGCCCTGGATGTCGCCAAATCGATTGCCCTCGGCGCTTCCGGCGC    830

BSNT_03403___    831 CGGAATGGCAGGGCA-TTTTTTAAAAGCGCTGACTGACAGTGGTGAGGAA    879
                     .|||||||| ||||| |||..|.|||||.||.||....|..||.||.||.
RBAM_021020__    831 GGGAATGGC-GGGCACTTTCCTGAAAGCTCTCACCTCTAAAGGAGAAGAG    879

BSNT_03403___    880 GGACTGCTTGAGGAGAT-TCAGCTGATCCTTG-AGGAATTAAAGATGATT    927
                     ||.|||.||||.||||| .|.||...|  ||| |.||..|.||.||||||
RBAM_021020__    880 GGCCTGTTTGACGAGATGACGGCGCTT--TTGCAAGAGCTGAAAATGATT    927

BSNT_03403___    928 ATGACCGTGCT-GGGCGCCAGAACGATTGACGATTTACAAAAGGCGCCCC    976
                     |||||||..|| ||..|||| |.||.||..|.|..|.|||||||||||..
RBAM_021020__    928 ATGACCGCCCTCGGATGCCA-ATCGGTTTCCCAACTGCAAAAGGCGCCTT    976

BSNT_03403___    977 TTGTGATCAAAGGTGAAACCCATCATTGGCTCACAGAGAGAGGGATCAAT   1026
                     |.||.||.||||||||.||.|||||.|||||..|.||..|.||.||..|.
RBAM_021020__    977 TGGTCATAAAAGGTGACACACATCACTGGCTTTCTGAACGGGGAATTGAC   1026

BSNT_03403___   1027 ACATCAAGCTATAGTGTGCGATAA   1050
                     |||||..|.|..||....||.|||
RBAM_021020__   1027 ACATCCCGTTTCAGCAGACGTTAA   1050


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