Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03405 and RBAM_021040

See Amino acid alignment / Visit BSNT_03405 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:37
# Commandline: needle
#    -asequence dna-align/BSNT_03405___cmk.1.9828.seq
#    -bsequence dna-align/RBAM_021040___cmk.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03405___cmk-RBAM_021040___cmk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03405___cmk-RBAM_021040___cmk.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03405___cmk
# 2: RBAM_021040___cmk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 686
# Identity:     520/686 (75.8%)
# Similarity:   520/686 (75.8%)
# Gaps:          22/686 ( 3.2%)
# Score: 1965.5
# 
#
#=======================================

BSNT_03405___      1 ATGGAAAAGAAATTATCGATTGCAATTGACGGCCCGGCAGCTGCGGGGAA     50
                     |||||.|||||||||||.|||||.||.|||||.|||||.|||||.||.||
RBAM_021040__      1 ATGGACAAGAAATTATCAATTGCGATCGACGGGCCGGCCGCTGCCGGAAA     50

BSNT_03405___     51 AAGCACCGTTGCCAAAATTGTGGCTGAGAAAAAATCGTACATATATATTG    100
                     ||||||||||||.|||||.|||||||||||||||||.||..|.||.||||
RBAM_021040__     51 AAGCACCGTTGCTAAAATAGTGGCTGAGAAAAAATCATATGTGTACATTG    100

BSNT_03405___    101 ATACAGGAGCAATGTATCGGGCGATTACGTACGCGGCTTTACAGGAAAAC    150
                     ||||||||||.||||||||.||.|||||.||..||||..|..||.|.||.
RBAM_021040__    101 ATACAGGAGCGATGTATCGTGCCATTACATATACGGCGCTCAAGCAGAAT    150

BSNT_03405___    151 GTTGATCTGACAGATGAAGAAAAACTG-GCT----GAGCTGCTAAAGCGG    195
                     |..|||.|.||.|||||||     |.| |||    ||||||||.|||||.
RBAM_021040__    151 GCCGATTTAACTGATGAAG-----CCGCGCTTACAGAGCTGCTGAAGCGT    195

BSNT_03405___    196 ACAGACATTGAGCT------AATTACAACAAAAGATGGACAAAAAGTGCT    239
                     ||.||.||||||||      ..||.|      .||.|||||||..||.||
RBAM_021040__    196 ACGGAAATTGAGCTTGTATCCGTTCC------GGAAGGACAAATCGTTCT    239

BSNT_03405___    240 TGTAAACGGCACAGATGTAACTGAGGCGATCAGAACAGATGAAGTCAGCA    289
                     .||||||||...||||||.||.||.|..|||.|.|.|||.||||||||||
RBAM_021040__    240 GGTAAACGGAGAAGATGTGACAGAAGAAATCCGTAAAGACGAAGTCAGCA    289

BSNT_03405___    290 ACCAAGTTTCAATTGCGGCCAAGCACAGAAGTGTCAGAGAAGAAATGGTG    339
                     |||||||.|||||.||.||||||||.|.|.|||||||||||||||||||.
RBAM_021040__    290 ACCAAGTATCAATCGCCGCCAAGCATAAAGGTGTCAGAGAAGAAATGGTC    339

BSNT_03405___    340 AAACGCCAGCAGCAGCTTGGGGAAAAAGGCGGCGTCGTCATGGATGGTCG    389
                     |||.|.|||||||||||.||..||||||||||.|||||||||||.||.||
RBAM_021040__    340 AAAAGACAGCAGCAGCTCGGACAAAAAGGCGGTGTCGTCATGGACGGCCG    389

BSNT_03405___    390 TGACATCGGGACGCATGTGCTGCCAAATGCAGAAGTAAAAATCTTTCTTT    439
                     |||.|||||.||.||.||||||||..||||.|||||.|||||.|||||..
RBAM_021040__    390 TGATATCGGTACTCACGTGCTGCCTGATGCCGAAGTGAAAATTTTTCTGC    439

BSNT_03405___    440 TGGCATCTGTTGAAGAGAGAGCGAAACGCCGTTATGAAGAAAATGTGAAA    489
                     |.||.||.||.||.||.||||||||.|||||.||||||||.|||..||||
RBAM_021040__    440 TCGCGTCCGTAGAGGAAAGAGCGAAGCGCCGATATGAAGAGAATAAGAAA    489

BSNT_03405___    490 AAAGGCTTTGATGTCAACTACGAAACATTAATTGAGGAAATTGCAAGAAG    539
                     |||||||.|||.||.||.|||||.||..|.|||||.||||||||.|||.|
RBAM_021040__    490 AAAGGCTATGACGTGAATTACGAGACGCTCATTGAAGAAATTGCCAGACG    539

BSNT_03405___    540 AGACAAGCTTGATTCAGAGCGCGAAGTATCTCCGCTGCGTAAAGCAGAAG    589
                     .|||||.||.|||||||||.|.|||||.||.||||||||.|||||.||||
RBAM_021040__    540 CGACAAACTCGATTCAGAGAGGGAAGTTTCCCCGCTGCGCAAAGCGGAAG    589

BSNT_03405___    590 ACGCTCTTGAAATCGACACGACATCGCTTTCCATTCAAGAGGTAGCTGAT    639
                     ||||..||||||||||.|||||.||.||...||||...||.||.||.|..
RBAM_021040__    590 ACGCGATTGAAATCGATACGACGTCACTCAGCATTGCCGAAGTCGCGGGA    639

BSNT_03405___    640 AAAATCCTCGAGGCTGTGGAGCAAAAGTCCCGCTGA    675
                     |||||.||.|||...||.||.||.||.||.||.|.|
RBAM_021040__    640 AAAATTCTGGAGATCGTCGAACAGAAATCACGTTAA    675


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