Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03421 and RBAM_021130

See Amino acid alignment / Visit BSNT_03421 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:38
# Commandline: needle
#    -asequence dna-align/BSNT_03421___ypbG.1.9828.seq
#    -bsequence dna-align/RBAM_021130___ypbG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03421___ypbG-RBAM_021130___ypbG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03421___ypbG-RBAM_021130___ypbG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03421___ypbG
# 2: RBAM_021130___ypbG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 847
# Identity:     546/847 (64.5%)
# Similarity:   546/847 (64.5%)
# Gaps:         125/847 (14.8%)
# Score: 1723.0
# 
#
#=======================================

BSNT_03421___      1 ATGAAGCTATCAGTGAAAATTGCCGGTGTACTAACTGTTGCGGCAGCGGC     50
                     ||||||||..|||.|..||||..|||    ||.|.||  ||||.||||||
RBAM_021130__      1 ATGAAGCTTACAGCGGGAATTCTCGG----CTCATTG--GCGGGAGCGGC     44

BSNT_03421___     51 ------AATGACGGCAAAAATGTATGCAACAGCAAAAGGCAATCATTTGA     94
                           .|||.||||....|||||...|||.|||||.||||..|||.|||
RBAM_021130__     45 TGCGGTTATGGCGGCCGTTATGTACAAAACGGCAAACGGCAGCCATCTGA     94

BSNT_03421___     95 AGACACATACGTTT--CCTTTATCAAAGATGAAGGGCAAGCCGCCTCTGA    142
                     |.||||||||.|||  .|||.||  ||.||||||||.|.|..|||.||.|
RBAM_021130__     95 AAACACATACATTTACGCTTGAT--AAAATGAAGGGGATGAAGCCGCTCA    142

BSNT_03421___    143 CAATCTTTTTTATTTCAGACATTCACAAACGTCTCATCGATCAAGACCTT    192
                     |.|||||||||||.||.|||.|.|||...|||.|.||.|||.||.|.|||
RBAM_021130__    143 CCATCTTTTTTATATCTGACGTGCACCGCCGTTTAATTGATGAAAAGCTT    192

BSNT_03421___    193 TTAGAAAAAGCGCGAAGC--CATGCCCCCCACTTGGTTATAA--------    232
                     .|       .||||||||  ||            ||||||||        
RBAM_021130__    193 CT-------CCGCGAAGCGGCA------------GGTTATAAGCCGGATG    223

BSNT_03421___    233 ---------TCGGCGGTGATTTAGCTGAGGGCGGGGTGCCCAGTGCGAGA    273
                              |||||||||||||.||.||||||||.||.||....||.|||
RBAM_021130__    224 CCGTTTTGCTCGGCGGTGATTTGGCGGAGGGCGGAGTTCCTTACGCCAGA    273

BSNT_03421___    274 ATCGAGGAAAACATCAAAAGGCTCGTACATTTCGGGGTC-----CCTATC    318
                     ||.||.||||||||.|||.|  ||.|||      ||.||     |||.||
RBAM_021130__    274 ATTGAAGAAAACATTAAACG--TCTTAC------GGCTCTTGCGCCTGTC    315

BSNT_03421___    319 GTGTTTGTGTGGGGGAATAATGATTATGAAGTCAGGCAGCATAAGCTGTA    368
                     .|||.|||||||||.|||||||||||.||.|||||.|||||.||.|||..
RBAM_021130__    316 ATGTATGTGTGGGGAAATAATGATTACGAGGTCAGCCAGCAAAAACTGCT    365

BSNT_03421___    369 TTC-----------CATATTTAAAGCGCACGGCATCATCACTCTGAGAAA    407
                     .||           ||||  |||||         |.|||.|.||||||||
RBAM_021130__    366 CTCTCTTTTACGGGCATA--TAAAG---------TGATCCCGCTGAGAAA    404

BSNT_03421___    408 TGAGTCAGTCCCGTTTTCATACAATGGGCATACGATTGCGAT-TGCGGGG    456
                     |||.||.||.|.||||.|.||.||.|||.|.||..||.|||| ||| |||
RBAM_021130__    405 TGAATCGGTTCAGTTTGCTTATAAAGGGGAAACCGTTACGATCTGC-GGG    453

BSNT_03421___    457 GTTGATGATATCAGGATGGAGATGGATCATTATGAGGAAGCCATCAAAGA    506
                     ||.|||||||||||||||..|||||||.||||.||....||.||||.|.|
RBAM_021130__    454 GTGGATGATATCAGGATGATGATGGATGATTACGAATCTGCAATCAGATA    503

BSNT_03421___    507 -ACTTGATG-----AAAGCCAGCTGAATATTCTGGTTTGCCATAATCCGG    550
                      || .||||     ||||     |.||..|.|||.||||||||||.||||
RBAM_021130__    504 TAC-GGATGCTGACAAAG-----TAAACCTCCTGCTTTGCCATAACCCGG    547

BSNT_03421___    551 AGATTCATGAACAAATCAATGAAGATGACGGTATTGA---TGTGATACTC    597
                     |.||.|||||.||.||.|..||....|||||.|||||   ||||   .||
RBAM_021130__    548 ACATCCATGAGCAGATGAGGGAGTCAGACGGGATTGACGCTGTG---TTC    594

BSNT_03421___    598 AGCGGACATACCCATGGAGGCCAGATCAGGTTTGGAAAATTCGGCCCTTA    647
                     |||||.|||||.|||||.|||||.|||.|.||.|||...|||||.||.||
RBAM_021130__    595 AGCGGCCATACGCATGGCGGCCAAATCCGTTTCGGACGGTTCGGGCCGTA    644

BSNT_03421___    648 TGAACTGGGGAAAACAGGTATTGTTAAAAACGCGGCA-TATCTAATCAGC    696
                     .|||.||||....||.||.|..||.|||||.|| ||| ||.||.||||||
RBAM_021130__    645 CGAATTGGGCGGGACGGGAACGGTAAAAAAAGC-GCATTACCTGATCAGC    693

BSNT_03421___    697 AACGGCTACGGCACGACAAAAGTGCCTCTTCGTTTAGGTGCTGAGCCTGA    746
                     |||||||||||.|||||||||||.||.||..|..|.||.||..|.||.||
RBAM_021130__    694 AACGGCTACGGGACGACAAAAGTTCCGCTGAGGCTCGGGGCGAAACCGGA    743

BSNT_03421___    747 AACTCACATTGTGACTCTTTGCGGGCCAGAATAA-------------    780
                     .||.||.||..|.||.||.|||||.|| |.||.|             
RBAM_021130__    744 GACGCATATGATTACGCTGTGCGGACC-GGATGAGCCGTCTTCCTGA    789


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03421 and RBAM_021130

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
