Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03425 and RBAM_021160

See Amino acid alignment / Visit BSNT_03425 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:38
# Commandline: needle
#    -asequence dna-align/BSNT_03425___ypbD.1.9828.seq
#    -bsequence dna-align/RBAM_021160___ypbD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03425___ypbD-RBAM_021160___ypbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03425___ypbD-RBAM_021160___ypbD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03425___ypbD
# 2: RBAM_021160___ypbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 626
# Identity:     413/626 (66.0%)
# Similarity:   413/626 (66.0%)
# Gaps:          94/626 (15.0%)
# Score: 1411.0
# 
#
#=======================================

BSNT_03425___      1 ATGACTGACCGTGATATGCTGAAGCAGTTATATTTGACGCAGCTACTCA-     49
                                    ||||   |||.||        ||   ||.||.|| 
RBAM_021160__      1 ---------------ATGC---AGCTGT--------AC---GCCACCCAA     21

BSNT_03425___     50 ----TCATCTTTGCCGCTGCTGC----AGCAGGACTGTTCTTTTTTGAGG     91
                         ||||.||.||.|.|.|.||    |.| ||..|.|||||||||...|
RBAM_021160__     22 TTGCTCATATTGGCGGTTTCAGCTGTTATC-GGCTTTTTCTTTTTTACCG     70

BSNT_03425___     92 ATGTACGGGACGTATTAAAGCTCTGGGACATTCGCGATATGCGA----AT    137
                     |..|.|..||..|.|||||.||.|||.|.||.||.||    |||    ||
RBAM_021160__     71 ACATTCACGATTTTTTAAAACTGTGGCATATACGTGA----CGATAATAT    116

BSNT_03425___    138 CATCTGGTATGGTGTTTCTATAGCTGTTATTGTTATTTTAGCCGATATGG    187
                     |||.|||||.|||||..||.|.||.||..||||.|||||.||||||.|||
RBAM_021160__    117 CATATGGTACGGTGTAACTCTTGCCGTCCTTGTCATTTTTGCCGATCTGG    166

BSNT_03425___    188 CAGTAATGAAATGGTTTCCGTCTCATTTATATGATGACGGCGGAATCAAT    237
                     |.||.||||||||||.|||.||.||||||||||||||||||||.||.|||
RBAM_021160__    167 CGGTGATGAAATGGTGTCCTTCGCATTTATATGATGACGGCGGCATTAAT    216

BSNT_03425___    238 AAAAAAATATTCAG-----TAAG---AGGTCAATCCCTCATATTATATTT    279
                           .||||  |     ||||   |||.|..|.|..||.|||.|.|||
RBAM_021160__    217 ------GTATT--GCTTTTTAAGAACAGGCCGGTTCTGCACATTTTGTTT    258

BSNT_03425___    280 TTAACGCTTCTGATTGCTTTC-GCGGAAGAAATGTTATTCAGAGGAGTGC    328
                     ||.||||||||.|||.|.||| || |||||.||.||.||||||||.||.|
RBAM_021160__    259 TTGACGCTTCTCATTTCGTTCAGC-GAAGAGATTTTGTTCAGAGGCGTTC    307

BSNT_03425___    329 TGCAGACTCATATCGGTTTATGGGCGGCCAGCCTTATATTTGCCGCTCTG    378
                     ||||.||.||||||||.||||||||.||||||.|.||.|||.|||..||.
RBAM_021160__    308 TGCAAACACATATCGGCTTATGGGCCGCCAGCTTCATTTTTACCGTGCTT    357

BSNT_03425___    379 CACTTTC-GGTATTTGTCAAAATGGCTGTTATTTATTATGGTGACAGCAA    427
                     || |||| |.||.|||.|.||.|||||..|.|||||.|||||..|.|..|
RBAM_021160__    358 CA-TTTCAGATACTTGGCGAAGTGGCTTCTGTTTATGATGGTTGCGGGCA    406

BSNT_03425___    428 TCAGCTTTTTGCTCGGTCTGATGTATGAATGGACCGGCAACTTATTTGTT    477
                     ||||..|||||||.||.||.||.|||||||||||||||||.|||||.|||
RBAM_021160__    407 TCAGTCTTTTGCTGGGGCTTATCTATGAATGGACCGGCAATTTATTCGTT    456

BSNT_03425___    478 CCGATGACGGCGCATTTTATCATTGATGCCGTGTTTGCCTGTCAGATTCG    527
                     |||.|.||.|||||||||||.||||||||.||.||||||||||||||.||
RBAM_021160__    457 CCGGTTACAGCGCATTTTATTATTGATGCGGTATTTGCCTGTCAGATCCG    506

BSNT_03425___    528 TTTTGAACATGTGAGGAGGGATAAACATGACGAACATGTCGAGAGTAGAG    577
                     ||||.||.||||.|||||||.|...|||||||.|.|||||.|||||.|| 
RBAM_021160__    507 TTTTCAATATGTTAGGAGGGGTTTGCATGACGGAAATGTCAAGAGTTGA-    555

BSNT_03425___    578 AGAAGAAAAGCCCAGAATCTTTATGA    603
                                               
RBAM_021160__    555 --------------------------    555


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