Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03430 and RBAM_021200

See Amino acid alignment / Visit BSNT_03430 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:39
# Commandline: needle
#    -asequence dna-align/BSNT_03430___ypaA.1.9828.seq
#    -bsequence dna-align/RBAM_021200___ypaA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03430___ypaA-RBAM_021200___ypaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03430___ypaA-RBAM_021200___ypaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03430___ypaA
# 2: RBAM_021200___ypaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 576
# Identity:     451/576 (78.3%)
# Similarity:   451/576 (78.3%)
# Gaps:           6/576 ( 1.0%)
# Score: 1738.0
# 
#
#=======================================

BSNT_03430___      1 GTGAAAGTAAAAAAATTAGTTGTGGTCAGCATGCTGAGCAGCATTGCATT     50
                     |||||||||||||||||||||||..||||.|||||.|||||.|||||.||
RBAM_021200__      1 GTGAAAGTAAAAAAATTAGTTGTCATCAGTATGCTTAGCAGTATTGCTTT     50

BSNT_03430___     51 TGTTTTGATGCTGTTAAATTTCCCGTTTCCGGGTCTTCCGGATTATTTAA    100
                     |||..|.||||||||||||||||||||||||||.||.||||||||.||.|
RBAM_021200__     51 TGTGCTTATGCTGTTAAATTTCCCGTTTCCGGGGCTGCCGGATTACTTGA    100

BSNT_03430___    101 AAATCGATTTTAGCGACGTTCCCGCTATTATTGCCATTCTGATTTACGGA    150
                     ||||.|||||.||.||||||||.||.|||||.||||||.||.|||||||.
RBAM_021200__    101 AAATTGATTTCAGTGACGTTCCTGCAATTATCGCCATTTTGGTTTACGGG    150

BSNT_03430___    151 CCTTTGGCGGGTATTGCCGTAGAAGCGATAAAAAATGTTCCTCAGTATAT    200
                     |||..||||||..||||.||.||||||||.||||||.|||..||||||||
RBAM_021200__    151 CCTGCGGCGGGGGTTGCGGTTGAAGCGATTAAAAATATTCTGCAGTATAT    200

BSNT_03430___    201 CATTCAGGGAAGCATGGCCGGAGTTCCTGTAGGGCAAGTTGCGAATTTTA    250
                     ||||||.||||||||||||||.||.|||||.|||||.|..||.|||||||
RBAM_021200__    201 CATTCAAGGAAGCATGGCCGGCGTGCCTGTCGGGCAGGCAGCCAATTTTA    250

BSNT_03430___    251 TTGCAGGAACACTCTTTATATTGCCGACTGCTTTCTTATTTAAAAAACTC    300
                     |.||.|||||.||.|||||..|||||||.||.||..|.||||||||.|||
RBAM_021200__    251 TCGCGGGAACGCTGTTTATTCTGCCGACGGCGTTTATGTTTAAAAAGCTC    300

BSNT_03430___    301 AACTCAGC-AAAGGGCTTGGCTGTCAGCCTGCTTTTGGGAACTGCAGCGA    349
                     ||.||.|| ||||||||| ||.||.||||||||....|||||.||.||||
RBAM_021200__    301 AATTCGGCAAAAGGGCTT-GCAGTGAGCCTGCTGGCCGGAACCGCGGCGA    349

BSNT_03430___    350 TGACCATTTTAATGAGTATTTTAAATTATGTTCTGATTCTTCCGGCATAC    399
                     |||||.|..|.|||||||||||.||.|||.||||.||.||.||.||.||.
RBAM_021200__    350 TGACCGTGCTGATGAGTATTTTGAACTATATTCTTATCCTGCCCGCGTAT    399

BSNT_03430___    400 ACGTGGTTTTTACATTCACCGGCATTATCCGACAGCGCGCTAAAAACAGC    449
                     ||.|||||||||||||||||||||.|.||..|||||..|.|||||||.||
RBAM_021200__    400 ACTTGGTTTTTACATTCACCGGCACTGTCAAACAGCCAGTTAAAAACGGC    449

BSNT_03430___    450 AGTCGTCGCAGGTATCCTCCCGTTTAACATGATAAAAGGTATTGTAATTA    499
                     .||.||||||||.|||||.|||||||||||..|||||||..||.|.||.|
RBAM_021200__    450 GGTTGTCGCAGGAATCCTGCCGTTTAACATTGTAAAAGGCGTTATCATCA    499

BSNT_03430___    500 CGGTTGTATTCTCACTAATTTTTATCAAGCTTAAGCCATGGATTGAGCAG    549
                     |..|.||.||..|..|.||.||||..|||||.||.||.||||||||.||.
RBAM_021200__    500 CCATCGTCTTTACGTTCATCTTTACGAAGCTGAAACCTTGGATTGAACAA    549

BSNT_03430___    550 CAGCGAAGTGCA--CATATCCATTAA    573
                     .|.||.|  |||  ||.|..||.|||
RBAM_021200__    550 AAACGCA--GCATCCAGACACAATAA    573


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