Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03467 and RBAM_021440
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:42
# Commandline: needle
# -asequence dna-align/BSNT_03467___sipS.1.9828.seq
# -bsequence dna-align/RBAM_021440___sipS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03467___sipS-RBAM_021440___sipS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03467___sipS-RBAM_021440___sipS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03467___sipS
# 2: RBAM_021440___sipS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 576
# Identity: 425/576 (73.8%)
# Similarity: 425/576 (73.8%)
# Gaps: 39/576 ( 6.8%)
# Score: 1582.0
#
#
#=======================================
BSNT_03467___ 1 TTGAAATCAGAAAATGTTTCGAAGAAAAAA----TCAA----------TA 36
||||||||||||| ||||||||| |.|| ||
RBAM_021440__ 1 TTGAAATCAGAAA--------AAGAAAAAACTTCTAAAAAAAGCGCCGTA 42
BSNT_03467___ 37 TTAGAATGGGTTAAAGCAATTGTGATTGCTGTCGTTCTTGCTTTGCTCAT 86
.|.||.||||..|||||.|||.|.||.|||||||||||.||..|||||||
RBAM_021440__ 43 CTTGATTGGGCGAAAGCCATTATCATCGCTGTCGTTCTGGCACTGCTCAT 92
BSNT_03467___ 87 CCGCAACTTTATTTTTGCGCCGTATGTCGTTGACGGTGAATCCATGGAAC 136
|||.||||||.|.|||||.||.|||.|||||||.||...|||.|||||.|
RBAM_021440__ 93 CCGAAACTTTTTATTTGCCCCTTATCTCGTTGATGGAAGATCAATGGATC 142
BSNT_03467___ 137 CTACACTTCACGATCGTGAAAGGGTCTTTGTCAATATGACAGTCAAATAC 186
|.||.||.||.||.||.||.||..||||||||||||||||.|||||||||
RBAM_021440__ 143 CGACGCTGCATGACCGCGAGAGAATCTTTGTCAATATGACGGTCAAATAC 192
BSNT_03467___ 187 ATCGGCGAGTTTGATAGAGGAGACATTGTCGTGTTAAACGGAGATGATGT 236
||..||||.||..|..|.||..|.||.|||||..|.||||||||..|.|.
RBAM_021440__ 193 ATAAGCGACTTCAAACGCGGCCAGATCGTCGTTCTGAACGGAGAAAACGA 242
BSNT_03467___ 237 TCACTATGTCAAACGTATTATCGGCCTTCCCGGCGATACGGTTGAGATGA 286
.|||||||||||.||.||||||||.|||||||||||.|||||..|.||||
RBAM_021440__ 243 GCACTATGTCAAGCGGATTATCGGACTTCCCGGCGACACGGTACAAATGA 292
BSNT_03467___ 287 AAAATGACCAGCTCTATATCAACGGGAAAAAGGTGGACGAACCTTATTTG 336
||||.||||||||.||.||||||||.|||||.|||..||||||.|||||.
RBAM_021440__ 293 AAAACGACCAGCTGTACATCAACGGCAAAAAAGTGTCCGAACCGTATTTA 342
BSNT_03467___ 337 GCGGCTAATAAAAAGAGAGCGAAACAGGACGGTAAACCTTTGACC----- 381
|||||.|||||..|.|..|||||.||.||||| ||.|||||
RBAM_021440__ 343 GCGGCAAATAAGCACAAGGCGAAGCAAGACGG-----CTATGACCGGCTG 387
BSNT_03467___ 382 ---GATGATTTCGGCCCGGTTAAAGTGCCTGATAACAAGTATTTTGTGAT 428
||.||.|||||||||||.||.|||||.||..||||.|||||.||.||
RBAM_021440__ 388 ACAGAAGACTTCGGCCCGGTGAAGGTGCCGGACGACAAATATTTCGTCAT 437
BSNT_03467___ 429 GGGTGACAATCGTCGGA-ATTCCATGGACAGCCGTAACGGACTTGGCCTC 477
||||||.||.|| |.|| |.||.|||||||||||.|||||.||.||.||.
RBAM_021440__ 438 GGGTGATAACCG-CAGAGAATCTATGGACAGCCGCAACGGCCTCGGTCTT 486
BSNT_03467___ 478 TTCACGAAAAAACAAATTGCGGGTACGTCAAAGTTTGTTTTCTACCCGTT 527
||.||||||||||||||.|||||.||.|||||.||.||.||||.||||||
RBAM_021440__ 487 TTTACGAAAAAACAAATAGCGGGCACATCAAAATTCGTCTTCTTCCCGTT 536
BSNT_03467___ 528 TAACGAAATGCGCAAAAC-AAATTAG 552
|||.|||||.|||||.|| ||||.|
RBAM_021440__ 537 TAATGAAATTCGCAAGACGAAATAA- 561
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