Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03477 and RBAM_021470

See Amino acid alignment / Visit BSNT_03477 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:42
# Commandline: needle
#    -asequence dna-align/BSNT_03477___ypuA.1.9828.seq
#    -bsequence dna-align/RBAM_021470___ypuA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03477___ypuA-RBAM_021470___ypuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03477___ypuA-RBAM_021470___ypuA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03477___ypuA
# 2: RBAM_021470___ypuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 910
# Identity:     676/910 (74.3%)
# Similarity:   676/910 (74.3%)
# Gaps:          44/910 ( 4.8%)
# Score: 2527.5
# 
#
#=======================================

BSNT_03477___      1 TTGAAGAAAATTTGGATTGGAATGCTGGCAGCGGCCGTTTTGCTGCTG-A     49
                     |||||.|||||.|||||||||.|||||||.|||||||||.|..|| || |
RBAM_021470__      1 TTGAAAAAAATGTGGATTGGATTGCTGGCGGCGGCCGTTGTATTG-TGTA     49

BSNT_03477___     50 CGGTTCCGAAGGTCAGTCTCGCGGATGCCGCAGTTGGAGATGTCATTGTA     99
                     |..|.|||||..||||.||.||.|||||||||||.|||||||||||.||.
RBAM_021470__     50 CAATACCGAAAATCAGCCTGGCCGATGCCGCAGTCGGAGATGTCATCGTC     99

BSNT_03477___    100 ACACTAGGTGCTGATTTGTCAGAATCCGACAAA----CAAAAAGTGCTTG    145
                     |||||.||.||.|||.|||||.|   ||| |||    ||.||||||||||
RBAM_021470__    100 ACACTGGGGGCGGATCTGTCAAA---CGA-AAACCGTCAGAAAGTGCTTG    145

BSNT_03477___    146 ATGAAATGAATGTCCCTGATAATGCCACAACGGTAACCGTGACCAATAAG    195
                     |.|||.|.||||||||||||||.||.|.||..||.||.||.||.|||||.
RBAM_021470__    146 ACGAATTAAATGTCCCTGATAACGCGATAAAAGTGACGGTCACGAATAAA    195

BSNT_03477___    196 GAAGAACATGAATATTTAGGAAAATATATATCAAACGCGCAAATCGGATC    245
                     |||||||||||||||.|.||||||||||||||.||.||.||||||||..|
RBAM_021470__    196 GAAGAACATGAATATCTGGGAAAATATATATCGAATGCCCAAATCGGCAC    245

BSNT_03477___    246 GAGAGCGATTTCTTCATCGTCAATCACCATTGCCAAAAAAGGCTCC-GGA    294
                     .|||||.||.||||||||.||.|||||..|.||.||.|||||.||| ||.
RBAM_021470__    246 AAGAGCCATCTCTTCATCATCCATCACGGTGGCAAAGAAAGGATCCGGGC    295

BSNT_03477___    295 TTGAATGTTGAGACCCATAATATCAGCGGCATCACGGATGAAATGTACCT    344
                     ||| |.|||.|||||||||||||||....|||||||||||||||||||.|
RBAM_021470__    296 TTG-ACGTTAAGACCCATAATATCAATTCCATCACGGATGAAATGTACTT    344

BSNT_03477___    345 GAATGCACTGATGACAGCCGGTGTGAAAGATGCGAAGGTGTATGTTACAG    394
                     .||.||.|||||||||||.||.||||||||||||||.||.||.||.||.|
RBAM_021470__    345 AAACGCCCTGATGACAGCAGGAGTGAAAGATGCGAAAGTATACGTGACGG    394

BSNT_03477___    395 CACCGTTTGAAGTATCCGGGACTGCGGCTTTAACTGGATTGATTAAGGCG    444
                     |.||||||||.|||||.||.||.||.||.|||||.|||.|.||.|||||.
RBAM_021470__    395 CGCCGTTTGAGGTATCAGGCACCGCAGCATTAACGGGAATCATCAAGGCA    444

BSNT_03477___    445 TATGAAGTTTCTTCTGACGAAGCGATCTCGGAGGATGTTAAGCAGGTCGC    494
                     ||||||||.||.||.|||.|||||||.||.||.|||||.||.||||||||
RBAM_021470__    445 TATGAAGTCTCATCAGACAAAGCGATTTCAGAAGATGTAAAACAGGTCGC    494

BSNT_03477___    495 CAACCAAGAGCTTGTCACGACATCAGAGCTTGGAGACAAAATCGGTAACG    544
                     ||||||||||||||||||.||.|||.|.||.||.||.||||||||..|..
RBAM_021470__    495 CAACCAAGAGCTTGTCACCACTTCAAATCTCGGGGATAAAATCGGGGATA    544

BSNT_03477___    545 AAAATGCGGCAGCCCTGATTGCAAAAATCAAAGAAGAGTTTGCTAAAAAC    594
                     ||||.||..|.||.||.||.|||||.||.|||||.||.||.||.||||||
RBAM_021470__    545 AAAACGCCTCCGCGCTCATCGCAAACATTAAAGATGATTTCGCGAAAAAC    594

BSNT_03477___    595 GGGGTGCCTGATAATAAAGCTGACATCGAAAAACAAGTGGACGACGCAGC    644
                     ||.|||||.||||..||||..|..||||..|||.|.||.||.||.||.||
RBAM_021470__    595 GGTGTGCCCGATACAAAAGAAGGAATCGGGAAAAAGGTCGATGATGCGGC    644

BSNT_03477___    645 TTCTGATTTAAACGTCACACTTACTGACAGC-CAAAAGAACCAGCTTGTC    693
                     |||..|..|.|||.|.|||||.|||||| || |||||..|||||||.||.
RBAM_021470__    645 TTCAAACCTTAACATTACACTGACTGAC-GCTCAAAAAGACCAGCTCGTT    693

BSNT_03477___    694 TCCCTATTCAATAAGATGAAAAACGCTGACATTGACTGGGGACAGGTCAG    743
                     ||..|.||.|||||.||||||||.||..|.|||||.|||||.||.|||.|
RBAM_021470__    694 TCATTGTTTAATAAAATGAAAAATGCCAAGATTGATTGGGGCCAAGTCGG    743

BSNT_03477___    744 TGACCAGCTAGATAAAGCGAAAGATAAGATTACGAAATTCATAGAATCAG    793
                     ...||||||.||.||.||.|||||.||.||.|||||.|||||..||||.|
RBAM_021470__    744 CAGCCAGCTTGACAAGGCAAAAGACAAAATCACGAAGTTCATTCAATCCG    793

BSNT_03477___    794 ATGAAGGCAAAAACTTCATCCAGAAAGTCATTGATTTCTTCGTATCTATC    843
                     ||||||||||||.|||..|.||.|||||||||||.|||||||..||.||.
RBAM_021470__    794 ATGAAGGCAAAAGCTTTGTTCAAAAAGTCATTGACTTCTTCGCTTCGATT    843

BSNT_03477___    844 TGGAATGCGATTGTATCTATATTCAAATAA--------------------    873
                     |||||||||||.||.|||.||||.|.|..|                    
RBAM_021470__    844 TGGAATGCGATCGTGTCTGTATTTACAGGAGACAGCGGATCAAGTTCTAA    893

BSNT_03477___    873 ----------    873
                               
RBAM_021470__    894 CAACAGCTGA    903


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