Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03480 and RBAM_021490

See Amino acid alignment / Visit BSNT_03480 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:43
# Commandline: needle
#    -asequence dna-align/BSNT_03480___spoVAF.1.9828.seq
#    -bsequence dna-align/RBAM_021490___spoVAF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03480___spoVAF-RBAM_021490___spoVAF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03480___spoVAF-RBAM_021490___spoVAF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03480___spoVAF
# 2: RBAM_021490___spoVAF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1514
# Identity:    1105/1514 (73.0%)
# Similarity:  1105/1514 (73.0%)
# Gaps:          64/1514 ( 4.2%)
# Score: 3885.0
# 
#
#=======================================

BSNT_03480___      1 ATGCCGGACCACAA--GGAAGAGAAAATTCGGGTTTATCGGAATCC-AGC     47
                     ||||||||  |.||  ||||.|.|..||...|||.||.|||.|||| || 
RBAM_021490__      1 ATGCCGGA--AAAACCGGAAAACATGATCAAGGTGTACCGGGATCCTAG-     47

BSNT_03480___     48 TAAAAATGAAGAGTATTTCAAAAACCGTGTTGGGATGGGGACGAGCTATG     97
                     .|||||||||.|.|.|||.|||.||||.||.||.|||||.||||||||||
RBAM_021490__     48 AAAAAATGAACAATTTTTTAAAGACCGCGTCGGTATGGGAACGAGCTATG     97

BSNT_03480___     98 ATGTAGGTGTTCGC-AAGCTCACGA-TTTTAGATAAAGAGATCCAGCTTT    145
                     ||||.||.||.||| |||.|  ||| |.|||||....||..|||||.|||
RBAM_021490__     98 ATGTCGGCGTCCGCAAAGTT--CGAGTATTAGACCGGGAAGTCCAGATTT    145

BSNT_03480___    146 ACTATCTAAATGGATTATGCGATACAGTTTATATTATTCATTTAATGAGA    195
                     |||.|.|.||.||||||..||||||..|.|.|||.||||||||||||..|
RBAM_021490__    146 ACTTTGTCAACGGATTAACCGATACTTTGTTTATCATTCATTTAATGGAA    195

BSNT_03480___    196 GAGCTTGTTGCCATTAACAAT-----CG-GAAAGAAGACCCTGATG-AGC    238
                     .||||.||.|.|.|.||.|||     || |||.|      |.|||| |||
RBAM_021490__    196 CAGCTCGTCGACGTCAATAATTATGACGAGAATG------CGGATGAAGC    239

BSNT_03480___    239 TGGTCGACATCGTCGAAAACAGGCTGCTTAACGCCCAGGTCGAAAAAGTA    288
                      |.|.|||.|.||.|||||||||||..|.||....|||||..|||||||.
RBAM_021490__    240 -GATTGACGTTGTTGAAAACAGGCTTGTCAATCAGCAGGTTCAAAAAGTC    288

BSNT_03480___    289 AAAACCTTGGATGAAACCACCGACCAAGTGCTGTCCGGGCTCGTCGCTGT    338
                     |||||..|.||.|||.|.||.||.||||||||.|||||.||.||.||.||
RBAM_021490__    289 AAAACGCTCGACGAAGCAACGGATCAAGTGCTTTCCGGACTTGTGGCGGT    338

BSNT_03480___    339 CATTGTTGAAGGTGCAGGTTTCGCATTTATAATTGACGTCAGAAGCTATC    388
                     .||.|||||||..||.||.|||||.|||||..|||||||||||||.||||
RBAM_021490__    339 TATCGTTGAAGACGCGGGCTTCGCCTTTATCGTTGACGTCAGAAGTTATC    388

BSNT_03480___    389 CGGGCAGAAACCCGGAAGAACCTGATACGGAAAAGGTAGTCAGAGGAGCC    438
                     |.||..|.|..||.||||||||.||||||||||||||.|||.|.||.||.
RBAM_021490__    389 CCGGACGCACACCTGAAGAACCGGATACGGAAAAGGTCGTCCGCGGGGCA    438

BSNT_03480___    439 AGAGACGGATTTGTTGAAAATATCGTCGTCAATACGGCCCTTCTCAGAAG    488
                     ||||||||.|||.||||||||||||||.|.|||||.||..|..|||||||
RBAM_021490__    439 AGAGACGGTTTTATTGAAAATATCGTCATTAATACAGCATTGATCAGAAG    488

BSNT_03480___    489 GCGGATCAGAGACGAGCGCCTTCGAGTCAAGATGACTAAAGTTGGTGAGC    538
                     .||.|||||.|||||..|.||.||.|||||.||.||.|||||.||.||||
RBAM_021490__    489 ACGAATCAGGGACGAAAGGCTCCGCGTCAAAATTACGAAAGTCGGCGAGC    538

BSNT_03480___    539 GGTCAAAGACGGAT-TTAAGCATTTGT-TATATAGAAGATATAGCTGATC    586
                     |.||.|||||.||| ||  ||..|||| |||||||||||.||.||.||.|
RBAM_021490__    539 GCTCTAAGACCGATCTT--GCGATTGTGTATATAGAAGACATCGCGGACC    586

BSNT_03480___    587 CGGATCTGGTTGAG-ATCGTAGAAAAAGAAGTTGCAT-CCATTGATGTCG    634
                     ||||.||.| |.|| |||||.|||||.|||| ||.|| |.|||||..|.|
RBAM_021490__    587 CGGACCTTG-TCAGCATCGTCGAAAACGAAG-TGAATGCGATTGACATTG    634

BSNT_03480___    635 ATGGATTAACAATGGCAGACAAAACTGTCGAGGAATTCATTGTTAATCAA    684
                     |.|||||.||.|||||.||.|||||.||.||.||||||||.||.||.||.
RBAM_021490__    635 ACGGATTGACGATGGCTGATAAAACGGTGGAAGAATTCATCGTCAAACAG    684

BSNT_03480___    685 AGCTATAATCCTTTTCCGCTCGTGCGCTATACAGAAAGACCGGATGTGGC    734
                     .|.||.|||||.||||||.|.||..|.||.|||||..|.||||||||.||
RBAM_021490__    685 GGTTACAATCCGTTTCCGATGGTCAGATACACAGAGCGGCCGGATGTAGC    734

BSNT_03480___    735 CGCAAATCATGTTCTAGAAGGCCATGTTATCATTATAGTGGACACATCGC    784
                     .||.|||||..||.|||||||.||.||.|||||..|.||.||.||.||.|
RBAM_021490__    735 AGCCAATCACATTTTAGAAGGGCACGTCATCATCGTCGTCGATACGTCAC    784

BSNT_03480___    785 CGAGTGTGATCATTACCCCGACGACTTTATTTCACCATGTGCAGCATGCT    834
                     ||||.||||||||.||.|||||.||..|||||||||||||.||||||||.
RBAM_021490__    785 CGAGCGTGATCATAACGCCGACAACGATATTTCACCATGTTCAGCATGCG    834

BSNT_03480___    835 GAAGAATATAGGCAGGCGCCTTCAGTCGGGACCTTTTTAAGATGGGTAAG    884
                     ||||||||.|||||||||||||||||.||.||.||||||||||||.|.||
RBAM_021490__    835 GAAGAATACAGGCAGGCGCCTTCAGTGGGCACATTTTTAAGATGGATCAG    884

BSNT_03480___    885 ATTTTTCGGTATTCTTGCTTCTACTTTATTTCTTCCGATCTGGTTTCTCT    934
                     .||||||||||||.|||||||.||..|..|.||||||||.|||||.||||
RBAM_021490__    885 GTTTTTCGGTATTATTGCTTCAACCGTTCTGCTTCCGATTTGGTTCCTCT    934

BSNT_03480___    935 TTGT------------GCTTCAGCCTGACCTGCTCTCGGACAATA-TGAA    971
                     ||||            .||||.||||||             ||.| ||.|
RBAM_021490__    935 TTGTTCTCGAACCGTCTCTTCTGCCTGA-------------AAGATTGGA    971

BSNT_03480___    972 ATTTATCGGTTTAAATAAAGATACGCATATCCCGATCATCCTGCAGATAT   1021
                     .||||||||||||||||||.|||||||.|||||||||||.|||||.||.|
RBAM_021490__    972 TTTTATCGGTTTAAATAAAAATACGCACATCCCGATCATTCTGCAAATCT   1021

BSNT_03480___   1022 TTTTAGCTGACTTAGGAATCGAGTTTCTCAGAATGGCTGCCATTCACACC   1071
                     ||||.||.||.||.||.||.|||||||||||.|||||.||.||.||.||.
RBAM_021490__   1022 TTTTGGCCGATTTGGGGATTGAGTTTCTCAGGATGGCCGCGATCCATACG   1071

BSNT_03480___   1072 CCGACGGCTTTATCAACAGCAATGGGTTTAATTGCCGCTGTTCTGATCGG   1121
                     |||||.||||||||.||.||.||||||.|.|||||.||.||.||||||||
RBAM_021490__   1072 CCGACCGCTTTATCCACCGCCATGGGTCTGATTGCGGCGGTGCTGATCGG   1121

BSNT_03480___   1122 GGAGATTGCGATTGAGGTCGGCCTTTTTTCTCCTGAGGTGATTCTGTACG   1171
                     ..|.||.||.||.|.|||.||.||.|||||..|.||.|||||||||||||
RBAM_021490__   1122 TCAAATCGCCATAGCGGTGGGGCTGTTTTCAGCAGAAGTGATTCTGTACG   1171

BSNT_03480___   1172 TCTCACTTGCGGCGATTGGAACCTTTACGACGCCCAGTTATGAATTAAGC   1221
                     |.||..|.||.||.||.|||.|.|||||.|||||.||.|||||..|.|||
RBAM_021490__   1172 TATCGATCGCCGCCATCGGATCATTTACCACGCCGAGCTATGAGCTCAGC   1221

BSNT_03480___   1222 TTGGCAAACAAAATGAGCCGTCTTGTCCTCATGATACTCGTTGCCTTATT   1271
                     .|.||.||.|||||||..||.||..||.|.|||.|.|||||.|||.|.||
RBAM_021490__   1222 CTCGCCAATAAAATGATACGCCTCATCTTAATGGTGCTCGTGGCCATTTT   1271

BSNT_03480___   1272 TCATATAAAAGGGCTCGTCATCGGATTTACAGTGCTAATTATTGCCATGG   1321
                     .||..|.|||||..|.||.||.||.||||||.||||..|.||....||||
RBAM_021490__   1272 CCAAGTGAAAGGCTTTGTGATAGGTTTTACATTGCTGCTGATCATAATGG   1321

BSNT_03480___   1322 CAAGCATCAAATCCCTTCAGACACCGTACTTATGGCCGCTGATTCCCTTT   1371
                     |.|..|||...||..||||.||.|||||.|||||||||.|..|.||.|||
RBAM_021490__   1322 CGAATATCCGCTCGTTTCACACGCCGTATTTATGGCCGTTTTTACCGTTT   1371

BSNT_03480___   1372 AACGGAAAGGCGCTGTGGCAGGTTCTTGTCCGCACAGCGAAA---CCTGG   1418
                     |||||.|||||||||||||||||.||.|||||.|   |||.|   ||.||
RBAM_021490__   1372 AACGGCAAGGCGCTGTGGCAGGTGCTCGTCCGGA---CGACAGTGCCGGG   1418

BSNT_03480___   1419 CGCAAAAGTAAGACCCAGTATCGTTCACCCCAAAAATCGCTTAAGGCAGC   1468
                     .||.|||||.|||||.||.||.||||||||.|||.|.||...|||.||||
RBAM_021490__   1419 AGCCAAAGTCAGACCGAGCATTGTTCACCCGAAAGACCGTCAAAGACAGC   1468

BSNT_03480___   1469 CTACCAATTCATAA   1482
                     |.|.|..|||||||
RBAM_021490__   1469 CAAGCGGTTCATAA   1482


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