Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03487 and RBAM_021550

See Amino acid alignment / Visit BSNT_03487 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:43
# Commandline: needle
#    -asequence dna-align/BSNT_03487___spoVAA.1.9828.seq
#    -bsequence dna-align/RBAM_021550___spoVAA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03487___spoVAA-RBAM_021550___spoVAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03487___spoVAA-RBAM_021550___spoVAA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03487___spoVAA
# 2: RBAM_021550___spoVAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 634
# Identity:     493/634 (77.8%)
# Similarity:   493/634 (77.8%)
# Gaps:          23/634 ( 3.6%)
# Score: 1926.0
# 
#
#=======================================

BSNT_03487___      1 ATGATGGAACGACGAATATTTATCCGGCTTCGCCACCGGGTGCTGGCACA     50
                        ||||||.|||||||||||.||.|.|||||||||||.|||..|||.||
RBAM_021550__      1 ---ATGGAAAGACGAATATTTCTCAGACTTCGCCACCGCGTGAAGGCTCA     47

BSNT_03487___     51 TCCAGGGGATATTATTACCGTTGGAGATGCCGCGCAAATAGAAGGGCAGC    100
                     |.|.||.|||||.||.||..|.||.||.||||||||.||.|..||.||||
RBAM_021550__     48 TACCGGAGATATCATCACAATCGGCGACGCCGCGCAGATTGCGGGACAGC     97

BSNT_03487___    101 TTCAGCTGAAAAAGAAACTTTCGGCTATGCCGCTTTATCAGGTGAGCG-A    149
                     ...||||||||||.|||||.|||||..|||||||.|||.||||.| || |
RBAM_021550__     98 AAAAGCTGAAAAAAAAACTGTCGGCACTGCCGCTGTATAAGGTCA-CGAA    146

BSNT_03487___    150 AAAAGATAAAAATATCGTAATTCTGGATATCATACAAGTCCTCAGAGCCA    199
                     ||||||.|||||||||||..|.|||||.||.|||.||||.||.|.|.|||
RBAM_021550__    147 AAAAGACAAAAATATCGTCGTGCTGGACATTATAAAAGTGCTGAAAACCA    196

BSNT_03487___    200 TTCA------TTTACAAGATCCGACACTTGATGTTCAAACCGTAGGCGGA    243
                     ||||      |||      |||..|.||||||||.||.|||||.|||||.
RBAM_021550__    197 TTCATACCGCTTT------TCCCGCGCTTGATGTACAGACCGTCGGCGGC    240

BSNT_03487___    244 GCAGAAACCATTGTTGAAATTCAATATC---GAAAGCGAAATTTATCAAC    290
                     ||.|||||.||.||.|||||.||.||.|   .|||||   |..|.|||.|
RBAM_021550__    241 GCTGAAACGATAGTGGAAATCCATTACCAGAAAAAGC---AGCTGTCAGC    287

BSNT_03487___    291 GGTTCTATTTATCGGTGTCTGGCTGCTTCTGTTTATTGGATCGTGTCTTG    340
                     .|||.||||..|||||||||||||.||.||.|||||.||.||.|||||||
RBAM_021550__    288 CGTTTTATTCGTCGGTGTCTGGCTCCTGCTTTTTATCGGTTCATGTCTTG    337

BSNT_03487___    341 CCATCATGAACTTTCATGAGGATGTAAGCATGAGAGATGTTCATATCGCA    390
                     ||||.|||||.||||||||.|||||.||.||||||||.|||||||||||.
RBAM_021550__    338 CCATTATGAATTTTCATGAAGATGTCAGTATGAGAGAAGTTCATATCGCC    387

BSNT_03487___    391 CTATATGAAATCATAACCGGAGAGAGGAATGACTATCCATATTTGCTTCA    440
                     .||||||||||||||||.||.||..|||||||.||.||.|||.|||||||
RBAM_021550__    388 TTATATGAAATCATAACGGGCGAACGGAATGAATACCCGTATCTGCTTCA    437

BSNT_03487___    441 AATCCCATACAGCATCGGTTTGGGACTGGGGATGATCGTGTTTTTTAACC    490
                     .||.||.|||||||||||..|.||.||.||.||||||||.||||||||.|
RBAM_021550__    438 GATTCCGTACAGCATCGGCCTCGGTCTCGGTATGATCGTCTTTTTTAATC    487

BSNT_03487___    491 ACATATTTAAAAAGCGCCTAAATGAAGAGCCCAGCCCGCTGGAGGTTGAG    540
                     ||||.||.|||||.|||||.|||||||||||.|||||||||||.||.|||
RBAM_021550__    488 ACATCTTCAAAAAACGCCTGAATGAAGAGCCAAGCCCGCTGGAAGTCGAG    537

BSNT_03487___    541 ATGTTTAACTATCAGCTTGATCTCGATCAATATGTGGCCATGCATGAGAA    590
                     ||||||||.||||||||||||||||||||.|||||.||.|||||.||.||
RBAM_021550__    538 ATGTTTAATTATCAGCTTGATCTCGATCATTATGTCGCAATGCACGAAAA    587

BSNT_03487___    591 TCAAGAAACCATAAAGGATCTGCATGATCGTTAG    624
                     |.||||.||.||.||.||||||||||||||||||
RBAM_021550__    588 TGAAGAGACGATGAAAGATCTGCATGATCGTTAG    621


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