Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03504 and RBAM_021660

See Amino acid alignment / Visit BSNT_03504 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:44
# Commandline: needle
#    -asequence dna-align/BSNT_03504___yqkK.1.9828.seq
#    -bsequence dna-align/RBAM_021660___yqkK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03504___yqkK-RBAM_021660___yqkK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03504___yqkK-RBAM_021660___yqkK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03504___yqkK
# 2: RBAM_021660___yqkK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 238
# Identity:     156/238 (65.5%)
# Similarity:   156/238 (65.5%)
# Gaps:          32/238 (13.4%)
# Score: 491.0
# 
#
#=======================================

BSNT_03504___      1 ATGGCAAAAAGCCAAGCGAAAAAGAAGCGGGAGCATCGATTGAGAAACGG     50
                     |||||.||.|||.||.|||||||.|.|||||||||||.....||||||| 
RBAM_021660__      1 ATGGCGAAGAGCAAAACGAAAAAAATGCGGGAGCATCTCAAAAGAAACG-     49

BSNT_03504___     51 CGGA--CGTGACGTCTTATTATCAAGAGGCAGCACACCATCTTTCAGCAC     98
                      |||  |||||||...|..|.|||||.||.|...|.||.|||||||||||
RBAM_021660__     50 -GGATGCGTGACGCAGTCCTGTCAAGGGGGACGGCGCCGTCTTTCAGCAC     98

BSNT_03504___     99 ACATGAAAGATTAACAAAAAGCAAAAAAGAGATTTT-----GAATAAACG    143
                     .|||||||||.|.||.||||.|||||||||.|...|     |||||    
RBAM_021660__     99 CCATGAAAGAGTGACGAAAACCAAAAAAGACAGGCTTGAAAGAATA----    144

BSNT_03504___    144 GAAGCATAA------GAATCCTTATGATCATACAGCAGTTGATGATAAGG    187
                      ||||||||      |||.||.|||||||  ||.|.|| ||||||...||
RBAM_021660__    145 -AAGCATAAAAAAAGGAACCCCTATGATC--ACCGGAG-TGATGACGGGG    190

BSNT_03504___    188 ---ATTTTTTTGTGCCCCAAAAAGCCGCCTAG------    216
                        .|||||||.|||||.||.....|||||..      
RBAM_021660__    191 GTTCTTTTTTTATGCCCGAATCTCGCGCCTTTCTATGA    228


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