Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03523 and RBAM_021810
See
Amino acid alignment /
Visit
BSNT_03523 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:46
# Commandline: needle
# -asequence dna-align/BSNT_03523___yqjZ.1.9828.seq
# -bsequence dna-align/RBAM_021810___yqjZ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03523___yqjZ-RBAM_021810___yqjZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03523___yqjZ-RBAM_021810___yqjZ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03523___yqjZ
# 2: RBAM_021810___yqjZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 363
# Identity: 251/363 (69.1%)
# Similarity: 251/363 (69.1%)
# Gaps: 39/363 (10.7%)
# Score: 829.5
#
#
#=======================================
BSNT_03523___ 1 ATGGATTTTTTATCAAAAACACCTGAGCCTCCTTACTATGCAGTCATTTT 50
||||.|||||||.|..|.||.||..|.||.||.||.|||||.||||||||
RBAM_021810__ 1 ATGGGTTTTTTAGCTGACACGCCCAAACCGCCCTATTATGCGGTCATTTT 50
BSNT_03523___ 51 TTCTTCTGTCAAAAGCGAAA--ATGACACAGG-ATATGGAGAAACAGCGG 97
|||.||..| ||||.|||| |||| ..||| |||||.|.|.||.||.|
RBAM_021810__ 51 TTCATCAAT--AAAGGGAAAATATGA-TGAGGAATATGAACATACGGCAG 97
BSNT_03523___ 98 AGCGGATG--GTATCGCTTG--CGGCGGATCAGCCTGGATTTTTAGGCGT 143
||||.||| |.|| ||| .|||||| |||||.||.||||||||||.
RBAM_021810__ 98 AGCGCATGATGAAT---TTGGCAGGCGGA-CAGCCGGGCTTTTTAGGCGC 143
BSNT_03523___ 144 GGAAAGCGTACGTGAAGCGGATGGAA-------GGGGCATCACAGTTTCC 186
|||||||||.||.|| |||| |.||||||||.||||||
RBAM_021810__ 144 GGAAAGCGTTCGGGA-------GGAAAACGGCTGCGGCATCACGGTTTCC 186
BSNT_03523___ 187 TATTGGGACAGTATGGACGCAATTAACCATTGGAAGCATCACACTGAACA 236
||.||||||||..||||.||.|||||....|||||..||||.|||||.||
RBAM_021810__ 187 TACTGGGACAGCCTGGAAGCGATTAAAAGGTGGAAAGATCATACTGACCA 236
BSNT_03523___ 237 TCAAGCAGCAAAAGAAAAAGGAAAAAGCGTTTGGTACGAGTCGTATGCAG 286
.||.||.||||||.|||||||||||||||..|||||.||..||||.||.|
RBAM_021810__ 237 CCAGGCGGCAAAACAAAAAGGAAAAAGCGCCTGGTATGAAGCGTACGCGG 286
BSNT_03523___ 287 TCCGCGTCGCAAAAATCGAAAGACAGCGGCTGTTT-------CAGGAGAA 329
|||||.|..|.||.|..||...|||||||.||||| .|||.|
RBAM_021810__ 287 TCCGCATTACGAAGACGGAGTCACAGCGGATGTTTGCGTCAAAAGGGG-- 334
BSNT_03523___ 330 CACGAATGATTGA 342
||.|.||||||
RBAM_021810__ 335 --CGGAAGATTGA 345
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.