Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03533 and RBAM_021890
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:47
# Commandline: needle
# -asequence dna-align/BSNT_03533___coaA.1.9828.seq
# -bsequence dna-align/RBAM_021890___coaA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03533___coaA-RBAM_021890___coaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03533___coaA-RBAM_021890___coaA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03533___coaA
# 2: RBAM_021890___coaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 962
# Identity: 758/962 (78.8%)
# Similarity: 758/962 (78.8%)
# Gaps: 4/962 ( 0.4%)
# Score: 2950.0
#
#
#=======================================
BSNT_03533___ 1 GTGAAAAATAAAGAACTTAACCTACATACTTTATATACACAGCACAATCG 50
|||||||.|||||||.|.|||.|||||||.||.|||||.|||||||..||
RBAM_021890__ 1 GTGAAAAGTAAAGAATTGAACTTACATACATTGTATACGCAGCACAGCCG 50
BSNT_03533___ 51 GGCGTCTTGGTCTGGTTTTGGGGGGCATTTGTCGATTGCTGTATCTGAAG 100
.|.|||.|||.|.||.||.||.||.|||.|.||.|||||.||.||.||.|
RBAM_021890__ 51 CGAGTCGTGGGCCGGATTCGGCGGCCATCTTTCCATTGCCGTTTCAGAGG 100
BSNT_03533___ 101 AAGAGGCAAAAGCTGTGGAAGGATTGAATGATTATCTATCTGTTGAAGAA 150
||||.||.||.||.||.||.||..|||||||.||.||.||.||.||||||
RBAM_021890__ 101 AAGAAGCCAAGGCCGTAGAGGGGCTGAATGACTACCTGTCGGTGGAAGAA 150
BSNT_03533___ 151 GTGGAAACGATCTATATTCCGCTTGTTCGCTTGCTTCATTTACATGTCAA 200
||.||||||||.||.|||||||||||.|||.||||.|||.|.|||||||.
RBAM_021890__ 151 GTAGAAACGATTTACATTCCGCTTGTGCGCCTGCTCCATCTTCATGTCAC 200
BSNT_03533___ 201 GTCTGCGGCTGAACGCAATAAGCATGTCAATGTTTTTTTGAAGCACCCAC 250
||||||.||...|||.|||.|||||||||||||.|||.|||||||.||.|
RBAM_021890__ 201 GTCTGCCGCAAGACGGAATCAGCATGTCAATGTGTTTCTGAAGCATCCGC 250
BSNT_03533___ 251 ATTCAGCCAAAATTCCGTTTATTATCGGCATTGCCGGCAGTGTCGCAGTC 300
|||||||.|||||.||||||||.|||||.||.||.|||||.|||||.|||
RBAM_021890__ 251 ATTCAGCGAAAATCCCGTTTATCATCGGAATCGCGGGCAGCGTCGCCGTC 300
BSNT_03533___ 301 GGAAAAAGCACGACGGCGCGGATCTTGCAGAAGCTGCTTTCGCGTTTGCC 350
||.|||||||||||||||.|.||.|||||.|||||.|||||.|||.||||
RBAM_021890__ 301 GGCAAAAGCACGACGGCGAGAATTTTGCAAAAGCTTCTTTCCCGTCTGCC 350
BSNT_03533___ 351 TGACCGTCCAAAAGTGAGCCTTATCACGACAGATGGTTTTTTATTTCCTA 400
.|||.|.||.||.||||||||..|.||.||.||.|||||.||.|.|||.|
RBAM_021890__ 351 GGACAGGCCGAAGGTGAGCCTGGTGACAACCGACGGTTTCTTGTATCCGA 400
BSNT_03533___ 401 CTGCCGAGCTGAAAAAGAAAAATATGATGTCTAGAAAAGGGTTTCCTGAA 450
|.||.||..|.||||.||||||..|..||||.|||||.||.||.||.|||
RBAM_021890__ 401 CGGCGGAATTAAAAAGGAAAAACCTTCTGTCCAGAAAGGGATTCCCGGAA 450
BSNT_03533___ 451 AGCTATGATGTAAAGGCGCTGCTCGAATTTTTGAATGACTTAAAATCAGG 500
|||||.||.||.||.||||||||.||||||.||||.||..||||.|||||
RBAM_021890__ 451 AGCTACGACGTGAAAGCGCTGCTTGAATTTCTGAACGATATAAAGTCAGG 500
BSNT_03533___ 501 AAAGGACAGCGTAAAGGCCCCGGTGTATTCCCATCTAACCTATGACCGCG 550
.||.||.||.||..||||.||.||.|||||||||||.||.||||||.|.|
RBAM_021890__ 501 GAAAGAGAGAGTGGAGGCGCCCGTATATTCCCATCTTACGTATGACAGGG 550
BSNT_03533___ 551 AGGAAGGTGTGTTCGAGGTTGTAGAACAGGCGGATATTGTGATTATTGAA 600
|.||.||.|...||||||||||.|||...||||||||.||.|||||.|||
RBAM_021890__ 551 AAGAGGGCGCCGTCGAGGTTGTCGAAGGTGCGGATATCGTTATTATCGAA 600
BSNT_03533___ 601 GGCATTAATGTGCTTCAGTCGCCCACCTTGGAGGATGACCGGGAAAACCC 650
||.||.|||||.||.||||||||.|||||.|||||.|||.|||||.|.||
RBAM_021890__ 601 GGAATCAATGTCCTGCAGTCGCCGACCTTAGAGGACGACAGGGAAGATCC 650
BSNT_03533___ 651 GCGTATTTTTGTTTCCGATTTCTTTGATTTTTCGATTTATGTGGATGCGG 700
|||.||||||||.||.||||||||||||||||||||.|||||||||||.|
RBAM_021890__ 651 GCGGATTTTTGTATCGGATTTCTTTGATTTTTCGATCTATGTGGATGCCG 700
BSNT_03533___ 701 AGGAAAGCCGGATTTTCACTTGGTATTTAGAGCGTTTTCGCCTGCTT-CG 749
|.|||||||||||||||||.||||||||.||||||||.||||| ||| .|
RBAM_021890__ 701 AAGAAAGCCGGATTTTCACGTGGTATTTGGAGCGTTTCCGCCT-CTTAAG 749
BSNT_03533___ 750 GGAAACTGCTTTTCAAAATCCTGATTCATATTTTCATAAATTTAAAGACT 799
.|||||.||||||||..||||.|.|||.|||||||||||||||||.||.|
RBAM_021890__ 750 AGAAACCGCTTTTCAGGATCCGGCTTCTTATTTTCATAAATTTAAGGATT 799
BSNT_03533___ 800 TGTCCGAT-CAGGAGGCTGACGAGATGGCAGCCTCGATTTGGGAGAGTGT 848
||||.||| || ||.||.||....|||||.|||||.|||||||||||.||
RBAM_021890__ 800 TGTCTGATGCA-GAAGCGGATACCATGGCCGCCTCCATTTGGGAGAGCGT 848
BSNT_03533___ 849 CAACCGGCCGAATTTATATGAAAATATTTTGCCGACTAAATTCAGGTCAG 898
||||||.||||||.|.|||||||||||..|||||||.||||||||.||.|
RBAM_021890__ 849 CAACCGTCCGAATCTGTATGAAAATATCCTGCCGACAAAATTCAGATCGG 898
BSNT_03533___ 899 ATCTCATTTTGCGTAAGGGAGACGGGCATAAGGTCGAGGAAGTGCTGGTA 948
||.|.||||||.|.||.||.||.||.|||||.||.||.||.|||||||||
RBAM_021890__ 899 ATTTGATTTTGAGAAAAGGTGATGGCCATAAAGTTGAAGAGGTGCTGGTA 948
BSNT_03533___ 949 AGGAGGGTATGA 960
|||.||||.|||
RBAM_021890__ 949 AGGCGGGTGTGA 960
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