Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03539 and RBAM_021930

See Amino acid alignment / Visit BSNT_03539 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:47
# Commandline: needle
#    -asequence dna-align/BSNT_03539___proI.1.9828.seq
#    -bsequence dna-align/RBAM_021930___proI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03539___proI-RBAM_021930___proI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03539___proI-RBAM_021930___proI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03539___proI
# 2: RBAM_021930___proI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 869
# Identity:     621/869 (71.5%)
# Similarity:   621/869 (71.5%)
# Gaps:          61/869 ( 7.0%)
# Score: 2147.5
# 
#
#=======================================

BSNT_03539___      1 ATGAAAAAGATAGGATTTGTCGGCGCCGGGTCAATGGCAGAAGCAATGAT     50
                     |||||.||.||.||.|||.||||.|||||.||||||||.|||||||||.|
RBAM_021930__      1 ATGAAGAAAATCGGTTTTATCGGGGCCGGATCAATGGCGGAAGCAATGGT     50

BSNT_03539___     51 CAACGGCATTTTGCAAAGCGGCATCACAAAACCAGAACACATCTATATTA    100
                     .|||||..|..||||||||||.||.|||...||.|.|||.||.|||||.|
RBAM_021930__     51 GAACGGACTGCTGCAAAGCGGGATGACAGCCCCCGGACATATATATATGA    100

BSNT_03539___    101 CAAATCGCTCAAATGACGAGCGTCTGATTGAA-----TTAAAGGAAACGT    145
                     ||||.||.||||||||| |||  |.|.|||||     ..|||  ||||||
RBAM_021930__    101 CAAACCGGTCAAATGAC-AGC--CGGCTTGAAGAGCTCCAAA--AAACGT    145

BSNT_03539___    146 ACGGCGTGCGTCCATGCAGAGATAAAAATGAGTTTTTCACTCACACCGAT    195
                     ||||.|||...||.|||.|.||||||.|.||||||||||...|.||||| 
RBAM_021930__    146 ACGGAGTGAAACCGTGCCGGGATAAAGAAGAGTTTTTCAGCAATACCGA-    194

BSNT_03539___    196 ATCATTATC---CTCGCTTTCAAACCGAAAGACGCGGCGGAAAGCATCGA    242
                       |||||||   |||||.||.|||||||||||.|||||.||||||||.||
RBAM_021930__    195 --CATTATCGTTCTCGCCTTTAAACCGAAAGATGCGGCAGAAAGCATTGA    242

BSNT_03539___    243 CAGCATCCGGCCGTATA--TCAAGGATCAGCTTGTAATTTCAGTACTTGC    290
                     .|.|||.||  ||.|||  |.||.|||||||||||.|||||.||..|.||
RBAM_021930__    243 GAACATTCG--CGAATACGTGAAAGATCAGCTTGTGATTTCTGTCATCGC    290

BSNT_03539___    291 AGGCCTTACCATCGAAACCATTCAGCATTATTTTGGCAGAAAGCTCGCGG    340
                     |||.||.||.||..|.||.||||||||.|||||.||||||||||||.|..
RBAM_021930__    291 AGGGCTGACGATTCACACGATTCAGCAATATTTCGGCAGAAAGCTCACCA    340

BSNT_03539___    341 TCATTCGCGTCATGCCTAATACATCAGCGG-CAATCAGAAAATCAGCAAC    389
                     ||||.||.|..|||||.||||||||.|||| ||.|||| .||||.||.||
RBAM_021930__    341 TCATCCGGGCGATGCCGAATACATCCGCGGCCATTCAG-CAATCGGCGAC    389

BSNT_03539___    390 CGGATTTTCCGTAAGCACGGAAGCAAGCAAGAA--TGATATTATTGCC--    435
                     |||.|||||||.||||.|.||.||.||  .|||  |||.||     ||  
RBAM_021930__    390 CGGTTTTTCCGCAAGCTCCGAGGCGAG--TGAAGCTGAAAT-----CCGG    432

BSNT_03539___    436 ---GCAAAAGCTCTATTGGAAACAATCGGTGATGCAACACTGGTTGAGGA    482
                        |||||||..||..|||||||||||||.||.||.||.|...||||.||
RBAM_021930__    433 ACGGCAAAAGAGCTTCTGGAAACAATCGGAGAAGCGACGCGCTTTGAAGA    482

BSNT_03539___    483 GCGGCATCTTGACGCTGTCACTGCAATCGCAGGCAGCGGCCCGGCCTATG    532
                     ....||.||||||||.|||||.||.||.||.||.|||||.||.|||||||
RBAM_021930__    483 AAAACACCTTGACGCCGTCACAGCCATTGCCGGAAGCGGTCCCGCCTATG    532

BSNT_03539___    533 TGTATCGTTATATTGAGGCGATGGAAAAAGCAGCACAAAAAGTAGGATTA    582
                     ||||.||.|||.|.||.||.||||||||.||.||.|...|||..||..|.
RBAM_021930__    533 TGTACCGGTATGTCGAAGCAATGGAAAAGGCCGCCCTTCAAGCCGGCCTG    582

BSNT_03539___    583 GATAAAGAAACGGCAAAAGCACTCATTTTGCAGACAATGGCAGGGGCAAC    632
                     ....|||||||||||||||..||.|||||.||.||.|||||.|||||.||
RBAM_021930__    583 CCGGAAGAAACGGCAAAAGAGCTGATTTTACAAACCATGGCCGGGGCGAC    632

BSNT_03539___    633 AGATATGCTCCTCCA----AAGCGGCAAACAGCCGGAAAAGCTGCGTAAA    678
                     .||.|||||    ||    ||||.||||||.|||.|||...|||||.||.
RBAM_021930__    633 GGAAATGCT----CAGAACAAGCAGCAAACGGCCTGAACGCCTGCGCAAG    678

BSNT_03539___    679 GAAATCACCAGTCCTGGGGGCACTACAGAGGCAGGTCTTCGCGCTTTACA    728
                     ||||||||.||.||.||.||||||||.||.|||||.||||||||.|||.|
RBAM_021930__    679 GAAATCACAAGCCCGGGCGGCACTACTGAAGCAGGCCTTCGCGCATTAGA    728

BSNT_03539___    729 GGACTCCCGCTTTGAAGAAGCAATTATTCACTGTATTGAAGAAACAGCTA    778
                     .||...|||||||||||||||.||.||.|||||.||.|.||||||.||..
RBAM_021930__    729 AGAGCGCCGCTTTGAAGAAGCCATCATGCACTGCATCGCAGAAACCGCAG    778

BSNT_03539___    779 AACGGAGCGCAGAAATCAAAGAACAGTTTGCCGGTGCCGCCTT-------    821
                     ..||||||||.|||||.||||||||.||.||.||..|||  ||       
RBAM_021930__    779 CCCGGAGCGCCGAAATTAAAGAACAATTCGCAGGCTCCG--TTCTGCAAA    826

BSNT_03539___    822 AGAGAGACATTCTTAG---    837
                     |||..|||     .||   
RBAM_021930__    827 AGACGGAC-----CAGTGA    840


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03539 and RBAM_021930

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
