Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03541 and RBAM_022120

See Amino acid alignment / Visit BSNT_03541 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:48
# Commandline: needle
#    -asequence dna-align/BSNT_03541___namA.1.9828.seq
#    -bsequence dna-align/RBAM_022120___yqjM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03541___namA-RBAM_022120___yqjM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03541___namA-RBAM_022120___yqjM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03541___namA
# 2: RBAM_022120___yqjM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1020
# Identity:     817/1020 (80.1%)
# Similarity:   817/1020 (80.1%)
# Gaps:           6/1020 ( 0.6%)
# Score: 3237.0
# 
#
#=======================================

BSNT_03541___      1 ATGGCCAGAAAATTATTTACACCTAT-TACAATTAAAGATATGACGTTAA     49
                     |||||||||||||||||.||||| || .||..||||||||.|.|||.|.|
RBAM_022120__      1 ATGGCCAGAAAATTATTCACACC-ATGGACCGTTAAAGATGTAACGATCA     49

BSNT_03541___     50 AAAACCGCATTGTCATGTCGCCAATGTGCATGTATTCTTCTCATGAAAAG     99
                     |||||||.|||||.|||.|.||.||||||||||||||.||.|||||.|||
RBAM_022120__     50 AAAACCGTATTGTTATGGCACCGATGTGCATGTATTCCTCACATGAGAAG     99

BSNT_03541___    100 GACGGAAAATTAACA-CCGTTCCACATGGCACATTACATATCGCGCGCAA    148
                     |||||||||.| .|| ||.||.||.|||||.||.|||||||||||.||||
RBAM_022120__    100 GACGGAAAACT-GCAGCCTTTTCATATGGCGCACTACATATCGCGTGCAA    148

BSNT_03541___    149 TCGGCCAGGTCGGACTGATTATTGTAGAGGCGTCAGCGGTTAACCCTCAA    198
                     ||||.||||||||.||||||||.||.||.|||.||||.|||||.||||||
RBAM_022120__    149 TCGGACAGGTCGGCCTGATTATCGTGGAAGCGACAGCCGTTAATCCTCAA    198

BSNT_03541___    199 GGACGAATCACTGACCAAGACTTAGGCATTTGGAGCGACGAGCATATTGA    248
                     ||.||.||..|.||.||.||.||.||||||||||||||.||.|||||.||
RBAM_022120__    199 GGGCGCATTTCCGATCAGGATTTGGGCATTTGGAGCGATGATCATATCGA    248

BSNT_03541___    249 AGGCTTTGCAAAACTGACTGAGCAGGTCAAAGAACAAGGTTCAAAAATCG    298
                     |||.|||||.||||||||.||.||.||.||||..|||||.||.|||||||
RBAM_022120__    249 AGGTTTTGCCAAACTGACGGAACAAGTGAAAGCGCAAGGATCTAAAATCG    298

BSNT_03541___    299 GCATTCAGCTTGCCCATGCCGGACGTAAAGCTGAGCTTGAAGGAGATATC    348
                     |||||||||||||.||.|||||||||||||||||||||||.|||||.||.
RBAM_022120__    299 GCATTCAGCTTGCACACGCCGGACGTAAAGCTGAGCTTGAGGGAGACATT    348

BSNT_03541___    349 TTCGCTCCATCGGCGATTGCGTTTGACGAACAATCAGCAACACCTGTAGA    398
                     |.||||||.||.||.|||.||||.||.||.||.||...||||||.|..||
RBAM_022120__    349 TACGCTCCGTCAGCCATTCCGTTCGATGAGCAGTCCAAAACACCGGCTGA    398

BSNT_03541___    399 AATGTCAGCAGAAAAAGTAAAAGAAACAGTTCAGGAGTTCAAGCAAGCGG    448
                     ||||.|..|||||.||.|.||||||||..|||||||.|||||.||.||.|
RBAM_022120__    399 AATGACGACAGAACAAATTAAAGAAACCATTCAGGAATTCAAACAGGCAG    448

BSNT_03541___    449 CTGCCCGCGCAAAAGAAGCCGGCTTTGATGTGATTGAAATTCATGCGGCG    498
                     |.||.|||||.|||||||||||||||||..|.||||||.||||||||||.
RBAM_022120__    449 CGGCGCGCGCGAAAGAAGCCGGCTTTGACATTATTGAACTTCATGCGGCA    498

BSNT_03541___    499 CACGGATATTTAATTCATGAATTTTTGTCTCCGCTTTCCAACCATCGCAC    548
                     |||||.||.|||||.||.|||||||||||.||.||.|||||.||.||.||
RBAM_022120__    499 CACGGCTACTTAATGCACGAATTTTTGTCCCCTCTGTCCAATCACCGTAC    548

BSNT_03541___    549 AGATGAATACGGCGGCTCACCTGAAAACCGCTATCGTTTCTTGAGAGAGA    598
                     |||.||||||||.|||||||.||||||.|||||.||.|||||..|.||||
RBAM_022120__    549 AGACGAATACGGAGGCTCACATGAAAATCGCTACCGCTTCTTAGGCGAGA    598

BSNT_03541___    599 TCATTGATGAAGTCAAACAAGTATGGGACGGTCCTTTATTTGTCCGTGTA    648
                     .||||||.|..|||||..||||.||||||||.||.||||||||||||.|.
RBAM_022120__    599 CCATTGAAGCCGTCAAGGAAGTCTGGGACGGCCCGTTATTTGTCCGTATT    648

BSNT_03541___    649 TCTGCTTCTGACTACACTGACAAAGGCTTAGACATTGCCGATCACATCGG    698
                     |||||.||.||.||.||.||||||||..|.||||||||.|||||.|||||
RBAM_022120__    649 TCTGCATCGGATTATACAGACAAAGGGCTGGACATTGCAGATCATATCGG    698

BSNT_03541___    699 TTTTGCAAAATGGATGAAGGAGCAGGGAGTTGACTTAATTGACTGCAGCT    748
                     ||||||.||.||||||||.||.||||||||.|||.|.|||||.|||||||
RBAM_022120__    699 TTTTGCGAAGTGGATGAAAGAACAGGGAGTCGACCTCATTGATTGCAGCT    748

BSNT_03541___    749 CAGGCGCCCTTGTTCACGCAGACATTAACGTATTCCCTGGCTATCAGGTC    798
                     |||||||.||.|||||.||.||.|||||.||.|||||.|||||.||.||.
RBAM_022120__    749 CAGGCGCACTCGTTCAAGCTGATATTAATGTCTTCCCAGGCTACCAAGTG    798

BSNT_03541___    799 AGCTTCGCTGAGAAAATCCGTGAACAGGCGGACATGGCTACTGGTGCCGT    848
                     ||||||||.||||||||||||||||||||.||.||.||.||.||.|||||
RBAM_022120__    799 AGCTTCGCAGAGAAAATCCGTGAACAGGCCGAAATCGCAACAGGCGCCGT    848

BSNT_03541___    849 CGGCATGATTACAGAC-GGTTCAATGGCTGAAGAAATTCTGCAAAACGGA    897
                     |||..||||.|| ||| ||..|||||||.||||||||||||||||||...
RBAM_022120__    849 CGGTTTGATAAC-GACGGGAACAATGGCGGAAGAAATTCTGCAAAACAAC    897

BSNT_03541___    898 CGTGCCGACCTCATCTTTATCGGCAGAGAGCTTTTGCGGGATCCATTCTT    947
                     ||.||.|||||.||.|||.|||..|||||.|||.||||.|||||...|||
RBAM_022120__    898 CGCGCTGACCTTATTTTTGTCGCAAGAGAACTTCTGCGCGATCCGCACTT    947

BSNT_03541___    948 TGCAAGAACTGCTGCGAAACAGCTCAATACAGAGATTCCGGCCCCTGTTC    997
                     ||||||.|.|||.|||||.|||||.|||||.||.||.|||.|.||.||||
RBAM_022120__    948 TGCAAGGAGTGCAGCGAAGCAGCTGAATACTGAAATACCGTCACCGGTTC    997

BSNT_03541___    998 AATACGAAAGAGGCTGGTAA   1017
                     |||||||.||||..||||.|
RBAM_022120__    998 AATACGACAGAGCATGGTGA   1017


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