Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03551 and RBAM_022180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:48
# Commandline: needle
# -asequence dna-align/BSNT_03551___yqjH.1.9828.seq
# -bsequence dna-align/RBAM_022180___yqjH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03551___yqjH-RBAM_022180___yqjH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03551___yqjH-RBAM_022180___yqjH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03551___yqjH
# 2: RBAM_022180___yqjH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1275
# Identity: 953/1275 (74.7%)
# Similarity: 953/1275 (74.7%)
# Gaps: 60/1275 ( 4.7%)
# Score: 3440.5
#
#
#=======================================
BSNT_03551___ 1 -ATGCCGGGAAAGAGCCGAATTATTTTCCATATTGATATGAATAGCTTTT 49
..|||||.|||| |..|||||||.||.|||||.||||||||.||.||||
RBAM_022180__ 1 GTGGCCGGAAAAG-GGAGAATTATATTTCATATCGATATGAACAGTTTTT 49
BSNT_03551___ 50 ATGCGTCGGTTGAAATGGCATATGATCCGGCTCTCCGGGGAAAGCCGGTC 99
||||.||.||.||||||||.|||||||||.||.|..|.|||||.||..||
RBAM_022180__ 50 ATGCCTCCGTAGAAATGGCGTATGATCCGTCTTTAAGAGGAAAACCTATC 99
BSNT_03551___ 100 GCAGTTGCCGGAAACGTAAAAGAGCGAAAGGGCATTGTGGTAACATGCAG 149
||.||||||||||||||.||.||.||.||.||.||..|.||.||.|||||
RBAM_022180__ 100 GCCGTTGCCGGAAACGTGAAGGAACGGAAAGGAATCATCGTCACCTGCAG 149
BSNT_03551___ 150 CTATGAAGCAAGAGCGCGCGGCGTCAAAACAACGATGCCGGTTTGGCAAG 199
|||||||||.||||||||.|||||.||.||.||.||||||||.||||..|
RBAM_022180__ 150 CTATGAAGCGAGAGCGCGGGGCGTAAAGACCACCATGCCGGTGTGGCGGG 199
BSNT_03551___ 200 CGAAGCGCCATTGTCCTGAGCTCATCGTTCTTCCGCCGAACTTTGACCGC 249
|.||.||.|..|||||.||.||||||||..|.||.|||||.|||||||||
RBAM_022180__ 200 CAAAACGTCTCTGTCCGGAACTCATCGTCGTGCCTCCGAATTTTGACCGC 249
BSNT_03551___ 250 TATAGAAACTCTTCACGAGCGATGTTTACCATTCTTCGTGAATATACTGA 299
|||.|.|..||.|||..||..|||||.|.||||||..|.||.|||||.||
RBAM_022180__ 250 TATCGGAGTTCGTCAAAAGAAATGTTCAGCATTCTGAGGGAGTATACGGA 299
BSNT_03551___ 300 CCTGGTGGAGCCTGTCTCTATCGACGAAGGCTATATGGACATGACCGATA 349
..|.||.||||||||.|||||.||.|||||.||.|||||.||.||.||.|
RBAM_022180__ 300 TTTAGTCGAGCCTGTTTCTATTGATGAAGGATACATGGATATTACGGACA 349
BSNT_03551___ 350 CACCATACAATAGCC-----GCGCTCTA-GAGACGGCAAAAGAAATCCAA 393
||||..|| |||| ||| || |||||.||..||||.||.| |
RBAM_022180__ 350 CACCGCAC---AGCCACAGGGCG---TATGAGACAGCCGAAGACATTC-A 392
BSNT_03551___ 394 AGC-AGGCTGCAAAAAGAGCTGCTGCTCCCGTCAAGCATAGGGATTGCGC 442
.|| ||.||||||||||||||..||||.|||||||||||.||.||.||.|
RBAM_022180__ 393 GGCGAGACTGCAAAAAGAGCTTTTGCTTCCGTCAAGCATCGGCATCGCCC 442
BSNT_03551___ 443 CGAATAAATTTCTCGCTAAGATGGCGTCTGATATGAAAAAACCGCTTGGA 492
|||||||||||||||||||.|||||.|||||.||||||||||||||.||.
RBAM_022180__ 443 CGAATAAATTTCTCGCTAAAATGGCTTCTGACATGAAAAAACCGCTCGGC 492
BSNT_03551___ 493 ATTACGATTTTAAGAAAGAGGCAAGTGCCTGA--TATCCTGTGGCCGCTT 540
||.||.|||||||||||.||..|..||||.|| ||| |.|||||.|||
RBAM_022180__ 493 ATCACCATTTTAAGAAAAAGAGAGCTGCCGGACGTAT--TATGGCCTCTT 540
BSNT_03551___ 541 CCTGTTGGAGAGATGCACGGAGTCGGCAAAAAGACAGCGGAAAAACTGAA 590
||..|||.||||||||||||..|.||.|..||.||.|||||||||.|.||
RBAM_022180__ 541 CCGATTGAAGAGATGCACGGTATAGGAACGAAAACTGCGGAAAAAATAAA 590
BSNT_03551___ 591 GGGACTCGGCATCCATACAATCGGAGAGCTAGCTGCAGCTGATGAACACT 640
....|||||||||.|.||.|||||.||..|.||...||..||||||||..
RBAM_022180__ 591 AACGCTCGGCATCAAAACGATCGGTGATTTGGCAAAAGGAGATGAACATG 640
BSNT_03551___ 641 CCCTG-AAACGCCTGCTTGGCATAAACGGTCCGCGCCTTAAAAATAAAGC 689
|.||| ||||| ||.||.|||||||||||.|||.|.||.||..|||||||
RBAM_022180__ 641 CGCTGAAAACG-CTTCTCGGCATAAACGGCCCGAGGCTGAAGGATAAAGC 689
BSNT_03551___ 690 AAATGGCATTCACCATGCGCCGGTTGACCCGGAGCGCATTTACGAATTTA 739
.||.|||||.||.|.|||....||..|.||.|||||.||.||.|||||||
RBAM_022180__ 690 GAACGGCATCCATCCTGCAGAAGTCAATCCCGAGCGGATATATGAATTTA 739
BSNT_03551___ 740 AAAGCGTCGGCAACTCATCGACACTTTCCCATGATTC------CAGTGAT 783
|||||||||||||||||||.||.||.||.|||||||| |.|.|||
RBAM_022180__ 740 AAAGCGTCGGCAACTCATCCACCCTGTCGCATGATTCGGCTGACTGGGAT 789
BSNT_03551___ 784 GAAGAAGAGCTGTTA---GGCGTCTTTAGA-AAGCTTGCCGCT-TCTGTG 828
||| ||| |||||.||| || ..|||.| |||| ||||||
RBAM_022180__ 790 GAA---------TTAACGGGCGTGTTT-GACCGGCTCG-CGCTGTCTGTG 828
BSNT_03551___ 829 AGTGCCCGTTTACAGCGCAAGGAAGTCATGGCTT--CGAAGCTTTTTATT 876
||.|..||..|.|||||.|||||.||||||||.| || |||.||.||.
RBAM_022180__ 829 AGCGAACGGCTCCAGCGTAAGGAGGTCATGGCCTGCCG--GCTGTTCATC 876
BSNT_03551___ 877 ATGATTAGATATGCGGATTGGAAAACCATCACAAGAAGCACCACGCTGAG 926
||||||.|.|||||||||||||||||..||||||||||||..||.||.||
RBAM_022180__ 877 ATGATTCGGTATGCGGATTGGAAAACGGTCACAAGAAGCATGACCCTCAG 926
BSNT_03551___ 927 AAACCCGATTGATCAAAAAAACGACATTTTGAAAGAAGCGGAGCACCTCT 976
.||.|||..||||||.|||||.|||||..||.|||..|||..|.|.||.|
RBAM_022180__ 927 CAATCCGGCTGATCAGAAAAAAGACATCATGGAAGCGGCGATGGAACTGT 976
BSNT_03551___ 977 TTTTTAAACATTGGAATAAAAATCCTGTCAGGCTGCTTGGCATTACCGGA 1026
||...||.||.|||||..|||||||.||.|||||.||.|||||.||||||
RBAM_022180__ 977 TTGACAAGCACTGGAACCAAAATCCGGTAAGGCTTCTCGGCATCACCGGA 1026
BSNT_03551___ 1027 ACGGATTTAGTAGAAAAAGAGCAGGCCTATAAACAGCTCGATTTG--TTC 1074
|||||..|.||.||||||.|||||||.|||||||||||.|||.|| |||
RBAM_022180__ 1027 ACGGAACTGGTTGAAAAACAGCAGGCATATAAACAGCTTGATCTGTTTTC 1076
BSNT_03551___ 1075 AGCTTTAATGAAGATGCGAAGGATGAGCCTATTCAGCAGATGATGGAAAA 1124
| ||.||.||.||.||.|||||||||||.|||...|||||||||.|..|
RBAM_022180__ 1077 A--TTCAAGGAGGACGCAAAGGATGAGCCGATTTTTCAGATGATGAACGA 1124
BSNT_03551___ 1125 GCTGAATAAAAAGTACGGTACCAAA--CTGATCAGAAAAGGGGCAACGT- 1171
|||||||.||||.||||| ||||| .|||||||||||||.|| |||
RBAM_022180__ 1125 GCTGAATGAAAAATACGG--CCAAAACTTGATCAGAAAAGGCGC--CGTT 1170
BSNT_03551___ 1172 -TAAAAAAAGAGGAGAGCAAAACAAAGGGAACAAGCTTTAATAAAGATTT 1220
||||||||||.||.||||||||||.||||||.||||||||.|.|||.||
RBAM_022180__ 1171 ATAAAAAAAGAAGAAAGCAAAACAAGGGGAACGAGCTTTAACAGAGACTT 1220
BSNT_03551___ 1221 TTTTCATGATGAAAAGAAAAGCTGA 1245
||||||.||||||||||||||.|||
RBAM_022180__ 1221 TTTTCAGGATGAAAAGAAAAGGTGA 1245
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