Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03564 and RBAM_022250

See Amino acid alignment / Visit BSNT_03564 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:49
# Commandline: needle
#    -asequence dna-align/BSNT_03564___yqjA.1.9828.seq
#    -bsequence dna-align/RBAM_022250___yqjA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03564___yqjA-RBAM_022250___yqjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03564___yqjA-RBAM_022250___yqjA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03564___yqjA
# 2: RBAM_022250___yqjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 971
# Identity:     761/971 (78.4%)
# Similarity:   761/971 (78.4%)
# Gaps:          19/971 ( 2.0%)
# Score: 3001.0
# 
#
#=======================================

BSNT_03564___      1 ATGTTTAAAATTGGTTATCGCACAATAAAGACCGCGCTAGGAACAGCTTT     50
                     |||||||||||.|||||.||||||.||||||||||.||.|||||.||..|
RBAM_022250__      1 ATGTTTAAAATCGGTTACCGCACACTAAAGACCGCACTTGGAACGGCGCT     50

BSNT_03564___     51 GGCTATTTATATAAGCCAGTTATTGCATTTGCAAAACTTCGCATCAGCAG    100
                     |||.||||||.||..||||.|.||||||.||||||||||||||||.||||
RBAM_022250__     51 GGCCATTTATTTAGCCCAGCTGTTGCATCTGCAAAACTTCGCATCCGCAG    100

BSNT_03564___    101 GAATCATCACCATTTTGTGCATACAAATCACACAAAAACGGTCGCTTCAG    150
                     |||||||||||||.||||||||.||.||.||.|||||.||||||||||||
RBAM_022250__    101 GAATCATCACCATATTGTGCATTCAGATTACGCAAAAGCGGTCGCTTCAG    150

BSNT_03564___    151 GCCTCATGGGCCCGCTTTGCGGCATGTTGTCTGGCAATTGTTTTTTCTTA    200
                     |||||.||||||||.|||||.||.||||...||||.||.||.||.||.||
RBAM_022250__    151 GCCTCGTGGGCCCGATTTGCCGCCTGTTTATTGGCGATCGTCTTCTCATA    200

BSNT_03564___    201 TCTCTTTTTCGAGCTTATTGGCTACCACCCGTTTGTTATCGGAGCGCTTC    250
                     |.|||||||||.|||.||.|||||..|.|||||||..||||||....|.|
RBAM_022250__    201 TGTCTTTTTCGGGCTGATCGGCTATTATCCGTTTGCGATCGGAATATTGC    250

BSNT_03564___    251 TTTTGATATTCATTCCGATAACGGTTCTGTTAAAAATTAACGAAGGTATC    300
                     |..||.|.||||||||||..||.||..|.||||||||.||||||||.||.
RBAM_022250__    251 TGGTGCTGTTCATTCCGACTACAGTCGTTTTAAAAATAAACGAAGGAATT    300

BSNT_03564___    301 GTCACCAGTTCCGTTATTATCCTTCATTTATACATGTCCGGCGGCATTAC    350
                     ||||||||.||.||.||.||.|||||||||||.|||||||||||||||||
RBAM_022250__    301 GTCACCAGCTCAGTAATCATTCTTCATTTATATATGTCCGGCGGCATTAC    350

BSNT_03564___    351 GCTTGCTTTCATCTGGAATGAAGTT-CAGCTGATTACGGTTGGCATCGGC    399
                     |.|.||.||.|||||||||| |||| ||||||||.||.||.||.||||||
RBAM_022250__    351 GATGGCGTTTATCTGGAATG-AGTTCCAGCTGATCACCGTAGGTATCGGC    399

BSNT_03564___    400 GTCGCTCTATTGATGAACTTGTATATGCCTAGTCTTGACCGGAAACTGAT    449
                     |||||.||.||.|||||..||||||||||.||.||.|||.|.|||||...
RBAM_022250__    400 GTCGCGCTGTTAATGAATCTGTATATGCCGAGCCTCGACAGAAAACTCGC    449

BSNT_03564___    450 TGCCTACCGCAAAAAGATAGAGGATAACTTTGCTGTCATTTTTGCAGAAA    499
                     .||.|||||.|||||.||.|||||.||||||.|.|||||.||.||.||||
RBAM_022250__    450 GGCATACCGGAAAAAAATTGAGGACAACTTTTCCGTCATCTTCGCCGAAA    499

BSNT_03564___    500 TCGAACGGTATTTGTTAACTGGTGAGCAAGATTGGTCAGGAAAAGAAATT    549
                     |||||||||||||||||||||||||||||||||||||.||.||.|||||.
RBAM_022250__    500 TCGAACGGTATTTGTTAACTGGTGAGCAAGATTGGTCGGGGAAGGAAATA    549

BSNT_03564___    550 CCGGAAACGCACCAGCTCATTACGGAGGCTAAAAACCTGGCATATCGAGA    599
                     |||||.|||||.|||.|.|||...|||||.||||||||.||.|||||.||
RBAM_022250__    550 CCGGAGACGCATCAGATGATTCAAGAGGCGAAAAACCTCGCCTATCGGGA    599

BSNT_03564___    600 TGTGCAAAACCACATTTTGCGTTATGAAAATCTGCATTATCATTATTTTA    649
                     .|||||.||.||.||||||||..||||||||||..|.|||||||||||||
RBAM_022250__    600 CGTGCAGAATCATATTTTGCGCCATGAAAATCTTTACTATCATTATTTTA    649

BSNT_03564___    650 AAATGAGAGAAAAGCAATTTGAAATTATCGAACGCCTTCTCCCTAAAGTG    699
                     |.||||||.|.||.|||||||||||.||.|||||.||.||.||.||..|.
RBAM_022250__    650 AGATGAGACAGAAACAATTTGAAATCATTGAACGGCTGCTGCCGAAGATT    699

BSNT_03564___    700 ACATCGATCTCCATTACGGTAGATCAGGGAAAAATGATCGCTGAATTTAT    749
                     ||.||.||.||.||.|||||.||.|||||.|||||.|||||..|.||.||
RBAM_022250__    700 ACCTCTATTTCAATAACGGTGGAGCAGGGCAAAATAATCGCCCATTTCAT    749

BSNT_03564___    750 TCATGATTTGCGGGAGGCGATACACCCTGGGAATACAGCGTACAAATTTC    799
                     .|||||.||..||||.||.||.||.||.||.|||||.||..|.||||||.
RBAM_022250__    750 CCATGAATTAAGGGAAGCCATTCATCCCGGCAATACCGCTCATAAATTTT    799

BSNT_03564___    800 TGAAAAGACTTGCTGACATGAGAAAAGAATTTGAGGAGATGCCGCTTCCG    849
                     |.|||||||||||.||.|||||||..||||||||.||.||||||||.|||
RBAM_022250__    800 TAAAAAGACTTGCAGAAATGAGAACGGAATTTGAAGAAATGCCGCTCCCG    849

BSNT_03564___    850 GCGACTAGAGAGGAATTTGAAGCAAGGGCCGCTCTCTTCCATCTTCTCGG    899
                     ||.||..|.|||||.||||||||..||||.|||.|.||||||||.|||||
RBAM_022250__    850 GCAACGCGCGAGGAGTTTGAAGCGCGGGCGGCTTTGTTCCATCTCCTCGG    899

BSNT_03564___    900 CGAAATGGAACAATATTTAGTGATTAAAAGTTATTTTAAAGGAATAAAAG    949
                     .||.||||||||||||.|.|||||||||||||||||.|||||.|| .|||
RBAM_022250__    900 TGAGATGGAACAATATCTCGTGATTAAAAGTTATTTCAAAGGCAT-CAAG    948

BSNT_03564___    950 C-GCAAAAATCACTCGGATGA    969
                     | |.||               
RBAM_022250__    949 CTGTAA---------------    954


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