Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03573 and RBAM_022300

See Amino acid alignment / Visit BSNT_03573 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:50
# Commandline: needle
#    -asequence dna-align/BSNT_03573___bmrU.1.9828.seq
#    -bsequence dna-align/RBAM_022300___bmrU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03573___bmrU-RBAM_022300___bmrU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03573___bmrU-RBAM_022300___bmrU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03573___bmrU
# 2: RBAM_022300___bmrU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 962
# Identity:     630/962 (65.5%)
# Similarity:   630/962 (65.5%)
# Gaps:         133/962 (13.8%)
# Score: 2023.5
# 
#
#=======================================

BSNT_03573___      1 ATGAGCCACCGGAAAGCGTTACTGATTCATAACGGAAATGCCGG-CAACA     49
                     ||||||||.||||||||..||.|.|||.||||||||||.||||| ||| |
RBAM_022300__      1 ATGAGCCAACGGAAAGCAGTATTAATTTATAACGGAAACGCCGGTCAA-A     49

BSNT_03573___     50 AAAATATAGAAAAAGCACTTGGTGCTGTCGTGCCGGTTTTATCTCACCAT     99
                     ||.|.||.||.|||.|.||.||..|.|||||.||..||||..|   |||.
RBAM_022300__     50 AACAGATTGATAAAACGCTCGGCACGGTCGTCCCCATTTTGGC---CCAG     96

BSNT_03573___    100 TTAGATGAGG---TGATTATTAAACAGACAAAGAAAAAGGATGATGCGTA    146
                     |.||.|||.|   |..|.|||||||.|||.||..|..||||||||||...
RBAM_022300__     97 TCAGCTGACGAACTTTTGATTAAACCGACCAAACATCAGGATGATGCCCG    146

BSNT_03573___    147 TCATTTTTGCCGATCCATTGATGATTCTGTCGACACCGTCTTC-------    189
                     |||.|.|||            |||...|.||||||    .|||       
RBAM_022300__    147 TCAGTATTG------------TGAAAATCTCGACA----GTTCAGTTGAC    180

BSNT_03573___    190 ---------ATTCTCGGCGGCGACGGCACGATCCATCAATGCAT-AAATG    229
                              |||.|.|||||.||||||||..|.||||||||||| ||..|
RBAM_022300__    181 CATTTATATATTTTAGGCGGAGACGGCACTGTGCATCAATGCATCAACAG    230

BSNT_03573___    230 CTATCAGCGCTCTAGAAAGAAAACCCGCGGTCGGAATTTTGCCCGGAGGC    279
                     | ||||||...||.||....|.||||||.|||||.||||||||.|||||.
RBAM_022300__    231 C-ATCAGCAAGCTTGATCACAGACCCGCTGTCGGCATTTTGCCGGGAGGA    279

BSNT_03573___    280 ACGTGCAATGACTTTTCAAGAGTGCTTGGCATCCCTCAAAATCTTGCAAA    329
                     ||||||||.||.||.|||.|.|.|||.||||||||.|||||.|||..|||
RBAM_022300__    280 ACGTGCAACGATTTCTCACGGGCGCTCGGCATCCCGCAAAACCTTCAAAA    329

BSNT_03573___    330 GGCCGCGGAAGCACTTATGGCAGGAAATAAAACCAGCG-----TAGACGT    374
                     ||||||.|||||.||...|||.|||.|||||     ||     |.|||||
RBAM_022300__    330 GGCCGCTGAAGCGCTCGCGGCCGGACATAAA-----CGGATGATTGACGT    374

BSNT_03573___    375 ATGTCAGATGAATGACCGTTATTTTTTAAATTTCTGGGGGATCGGCTTAA    424
                     .|||.|.|.|.|||||.|.||||||.|.||.||||||||.|||||..|.|
RBAM_022300__    375 CTGTAAAACGGATGACGGCTATTTTCTGAACTTCTGGGGCATCGGACTGA    424

BSNT_03573___    425 TTGCAGAAACGTCGAATCAAATCAACGAAACGGAAAAAGCATTATTGGGA    474
                     |..|.|||.|.||.|..||.||.||.|||||.||||||||||...|.||.
RBAM_022300__    425 TCACCGAAGCATCAAGCCATATTAATGAAACTGAAAAAGCATGGCTTGGT    474

BSNT_03573___    475 AAAATCAGCTATTTTACAAGTGCGTTGCGAACCGTCTCATCCGCTGCA-T    523
                     |||||||||||.||.||.||.||.|||||.||..|..||..||| |.| .
RBAM_022300__    475 AAAATCAGCTACTTCACGAGCGCCTTGCGGACGATGACAAGCGC-GAACC    523

BSNT_03573___    524 CGTTTCCGATGACATTAAAAATTGACGG------AAAAGAAATTAAAGAA    567
                     |||||||..|.|.|||.|..||||||||      .||||      ||||.
RBAM_022300__    524 CGTTTCCTGTCAAATTGACGATTGACGGCGAGGTGAAAG------AAGAC    567

BSNT_03573___    568 GAAGCCGTTATGCTGCTTGTGATGAATGGCCAATACATTGGAACGAATCG    617
                     ||||||||.|||.|||||||.|||||.||.||.||.||.||.||.||..|
RBAM_022300__    568 GAAGCCGTAATGGTGCTTGTCATGAACGGGCATTATATCGGGACAAACAG    617

BSNT_03573___    618 AATTCCTCTGCCCGATGCCAGTATTGAAGACGGCTTACTTGATGTTCTCA    667
                     |.||||.|||||.||||||||..|..|.|||||||||...|||||..|.|
RBAM_022300__    618 AGTTCCCCTGCCTGATGCCAGCCTCCAGGACGGCTTAGCCGATGTGTTAA    667

BSNT_03573___    668 TATGCCGCAACACCAACCTCACCGCGCTGCGGGAGCTGATGAGCATGGAA    717
                     |.|||||||||||.|.|||..|||||.|||||||||||||||..|||||.
RBAM_022300__    668 TCTGCCGCAACACAAGCCTTGCCGCGTTGCGGGAGCTGATGACGATGGAG    717

BSNT_03573___    718 CAGGGCTCAATTGATCGTTTTACCGGAGAGCTGTCCTATGTCCAGGCCTC    767
                     |||||.||..|||||..|||.|..||.||||||||||||.|.||||||||
RBAM_022300__    718 CAGGGTTCGTTTGATGATTTCAAAGGGGAGCTGTCCTATATTCAGGCCTC    767

BSNT_03573___    768 CCGTATCGAAATTGAAAC--------AGACACTGCCAAAAAGGCGGATAT    809
                     |.|.||.|||||.|||||        |||   ||     .|.|||||||.
RBAM_022300__    768 CAGGATTGAAATCGAAACCGGACGTGAGA---TG-----GACGCGGATAC    809

BSNT_03573___    810 GGATGGAGAAGTTTATAC---ACATACACC---------CGCAGT-----    842
                     .|||||.||.|  |||||   ||| |||||         ||.|||     
RBAM_022300__    810 AGATGGCGAGG--TATACGGAACA-ACACCTTGTACGATCGAAGTGAAAA    856

BSNT_03573___    843 --CATTCAGGTCCTGCCGCAGCATATCGAC-ATGCTTGTTCCCG------    883
                       |||                |||.|| || |||.|||||||||      
RBAM_022300__    857 AACAT----------------CATCTC-ACTATGATTGTTCCCGAGGATT    889

BSNT_03573___    884 CA-AATGGATAA    894
                     || ||||.    
RBAM_022300__    890 CACAATGA----    897


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