Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03578 and RBAM_022310
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:50
# Commandline: needle
# -asequence dna-align/BSNT_03578___bkdB.1.9828.seq
# -bsequence dna-align/RBAM_022310___bkdB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03578___bkdB-RBAM_022310___bkdB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03578___bkdB-RBAM_022310___bkdB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03578___bkdB
# 2: RBAM_022310___bkdB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1308
# Identity: 982/1308 (75.1%)
# Similarity: 982/1308 (75.1%)
# Gaps: 78/1308 ( 6.0%)
# Score: 3670.0
#
#
#=======================================
BSNT_03578___ 1 ATGGCAATTGAACAAATGACGATGCCGCAGCTTGGAGAAAGCGTAACAGA 50
|||||.||||||||||||.|.|||||.|||||.|||||.|||||.||.||
RBAM_022310__ 1 ATGGCGATTGAACAAATGGCTATGCCTCAGCTCGGAGAGAGCGTGACGGA 50
BSNT_03578___ 51 GGGGACGATCAGCAAATGGCTTGTCGCCCCCGGTGATAAAGTGAACAAAT 100
.||||||||||||||.|||||.||..|||||||||||.|||||||.||||
RBAM_022310__ 51 AGGGACGATCAGCAAGTGGCTGGTATCCCCCGGTGATCAAGTGAATAAAT 100
BSNT_03578___ 101 ACGATCCAATCGCGGAAGTCATGACAGATAAGGTAAATGCAGAGGTTCCG 150
|.||.||.||||||||.||||||||||||||.||.||.||.|||||.|||
RBAM_022310__ 101 ATGACCCCATCGCGGAGGTCATGACAGATAAAGTGAACGCGGAGGTGCCG 150
BSNT_03578___ 151 TCTTCTTTTACTGGTACGATAACAGAGCTTGTGGGAGAAGAAGGCCAAAC 200
|||||||||||.||||||||.|.|||.|||||.||||||||||||||.||
RBAM_022310__ 151 TCTTCTTTTACCGGTACGATTAGAGAACTTGTAGGAGAAGAAGGCCAGAC 200
BSNT_03578___ 201 -CTTGCAAGTCGGAGAAGTGATTTGCAAAATTGAAACAGAAG--GCGCGA 247
||||| ||||||.||..|.||.||||||||||||||||||| .|| ||
RBAM_022310__ 201 TCTTGC-AGTCGGCGAGATCATCTGCAAAATTGAAACAGAAGAAACG-GA 248
BSNT_03578___ 248 ATCCG-------GCTGAA-CAAAAACAAGAACAGCCAGCTGCTTCAAAAG 289
|.||| ||.||| |...||.||||.||| ||.||
RBAM_022310__ 249 AACCGAAGAGGCGCCGAAGCGGGAAGAAGAGCAG-----------AATAG 287
BSNT_03578___ 290 CCGCTGAGACGCCTGCTGCAAAAAGTGCCG--AAGCAGCTGATCAGCCCA 337
||..|.|||| .|||.|||||| ||| |||.....||||||.|.|
RBAM_022310__ 288 CCCTTCAGAC-ACTGATGCAAA-----CCGTCAAGGTAAAGATCAGTCAA 331
BSNT_03578___ 338 ATAAAAAGCGCTACTCGCCAGCTGTACTCCGTTTGGCCGGAGAGCACGGC 387
|||||..|||.||.|||||.||.||.|||.|.||.||.|||||.||||||
RBAM_022310__ 332 ATAAAGCGCGTTATTCGCCGGCCGTGCTCAGATTAGCGGGAGAACACGGC 381
BSNT_03578___ 388 ATTGACCTCGATCAAGTAACAGGAACAGGTGCCGGCGGGCGCATCACACG 437
|||.|.||.||..||||...||||||.|||||.|||||..|.||.||.||
RBAM_022310__ 382 ATTCAGCTTGAAGAAGTTGAAGGAACGGGTGCAGGCGGAAGAATTACGCG 431
BSNT_03578___ 438 AAAAGATATTCAGCGCTTAATTGAAACAGGCGGCGTACAA-GAA-CAGAA 485
||||||.|||||.....|.|||||..|.|| || ||| |||||
RBAM_022310__ 432 AAAAGACATTCAAAAGATCATTGATTCGGG--------AATGAAGCAGAA 473
BSNT_03578___ 486 GGCTGA------GGAGCCG---------AAAACA--GCAGCTCCTGCACC 518
|.|.|| ||.|||| .||||| ||| .|..||.||
RBAM_022310__ 474 GTCGGAAGCACCGGCGCCGGCTGCCGTTCAAACAACGCA--ACAAGCGCC 521
BSNT_03578___ 519 GAAGTCTGCATCAAAACCTGAGCCAAAAGAAGAGACGTCATATCCTGCGT 568
||| |.||| |||.|.||.|||...||.|| ||.|| |
RBAM_022310__ 522 GAA---------ACAAC---AGCAAGAACAAGCACCGGCA---CCAGC-T 555
BSNT_03578___ 569 CTG-CAGCCGGTGATAAAGAAATCCCTGTCACAGGTGTAAGAAAAGCAAT 617
||| ||||||||||||..|||||.||.||.|||||.||.||||||||.||
RBAM_022310__ 556 CTGTCAGCCGGTGATATTGAAATTCCGGTTACAGGCGTCAGAAAAGCCAT 605
BSNT_03578___ 618 TGCTTCCAATATGAAGCGAAGCAAAACAGAAATTCCGCATGCTTGGACGA 667
.||..||||||||.|...||||||||||||||||||||||||.|||||||
RBAM_022310__ 606 CGCCGCCAATATGCATAAAAGCAAAACAGAAATTCCGCATGCCTGGACGA 655
BSNT_03578___ 668 TGATGGAAGTCGACGTCACAAATATGGTTGCATATCGCAACAGTATAAAA 717
||||||||||.||||||||.||||||...||.||..|.|||||.||.|||
RBAM_022310__ 656 TGATGGAAGTGGACGTCACGAATATGACGGCGTACAGAAACAGCATTAAA 705
BSNT_03578___ 718 GATTCCTTTAAGAAGACAGAGGGCTTTAATTTAACGTTCTTCGCCTTTTT 767
||.||.|||||..|.|.|||.|||||.|||||||||||.|||||.||.||
RBAM_022310__ 706 GACTCATTTAAACAAAAAGAAGGCTTCAATTTAACGTTTTTCGCTTTCTT 755
BSNT_03578___ 768 TGTAAAAGCGGTCGCTCAGGCGTTAAAAGAATTCCCACAAATGAATAGCA 817
|||||||||||..||.|||||..|.|||||.|||||.||.|||||.||||
RBAM_022310__ 756 TGTAAAAGCGGCGGCGCAGGCTCTCAAAGAGTTCCCGCAGATGAACAGCA 805
BSNT_03578___ 818 TGTGGGCGGGGGACAAAATTATTCAGAAAAAGGATATCAATATTTCAATT 867
||||||||||.||||||||..|.||.||.||.||.|||||.||.||.|||
RBAM_022310__ 806 TGTGGGCGGGAGACAAAATCGTCCAAAAGAAAGACATCAACATCTCCATT 855
BSNT_03578___ 868 GCAGTTGCCACAGAGGATTCTTTATTTGTTCCGGTGATTAAAAACGCTGA 917
||.||||||||.||.|||||..|.|||||||||||.|||||..|.|||||
RBAM_022310__ 856 GCCGTTGCCACGGAAGATTCGCTGTTTGTTCCGGTTATTAAGCATGCTGA 905
BSNT_03578___ 918 TGAAAAAACAATTAAAGGCATTGCGAAAGACATTACCGGCCTAGCTAAAA 967
|||||||||.|||||||||||.||.|.|||.||.||.|.|||.||.||||
RBAM_022310__ 906 TGAAAAAACGATTAAAGGCATAGCCAGAGAAATAACGGACCTTGCGAAAA 955
BSNT_03578___ 968 AAGTAAGAGACGGAAAACTCACTGCAGATGACATGCAGGGAGGCACGTTT 1017
||||.|||.||||||||||.||.||.||.||.||||||||.|||||.|||
RBAM_022310__ 956 AAGTGAGAAACGGAAAACTTACCGCGGAAGATATGCAGGGCGGCACATTT 1005
BSNT_03578___ 1018 ACCGTCAACAACACAGGTTCGTTCGGCTCTGTTCAGTCAATGGGCATTAT 1067
||||||||.|||||.||.||.||||||||.|||||.||.|||||||||||
RBAM_022310__ 1006 ACCGTCAATAACACGGGATCTTTCGGCTCAGTTCAATCTATGGGCATTAT 1055
BSNT_03578___ 1068 CAACTACCCTCAGGCTGCGATTCTTCAAGTAGAATCCATCGTCAAACGCC 1117
||||.|.||.|||||.|||||||||||.||.||.||.|||||||||||.|
RBAM_022310__ 1056 CAACCATCCGCAGGCGGCGATTCTTCAGGTGGAGTCTATCGTCAAACGTC 1105
BSNT_03578___ 1118 CGGTTGTCATGGACAATGGCATGATTGCTGTCAGAGACATGGTTAATCTG 1167
|||||||||||.|.||.||.|||||.||.||..|.||.|||||||||||.
RBAM_022310__ 1106 CGGTTGTCATGAATAACGGGATGATCGCCGTTCGTGATATGGTTAATCTT 1155
BSNT_03578___ 1168 TGTCTGTCCTTAGATCACAGAGTGCTTGACGGTCTCGTGTGCGGACGATT 1217
||.|||||.|||||||||||||||||.|||||.|||||||||||.|||||
RBAM_022310__ 1156 TGCCTGTCTTTAGATCACAGAGTGCTCGACGGGCTCGTGTGCGGCCGATT 1205
BSNT_03578___ 1218 CTTGGGACGTGTGAAACAAATTTTAGAATCGATTGACGAGAAGACATCTG 1267
|.|.|||||.||.|||.|.||.||||||...|||||.||..|.||.||.|
RBAM_022310__ 1206 CCTCGGACGCGTCAAAGAGATCTTAGAAAACATTGATGAACATACTTCCG 1255
BSNT_03578___ 1268 TTTACTAA 1275
|.||.|||
RBAM_022310__ 1256 TCTATTAA 1263
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