Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03579 and RBAM_022320

See Amino acid alignment / Visit BSNT_03579 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:50
# Commandline: needle
#    -asequence dna-align/BSNT_03579___bkdAB.1.9828.seq
#    -bsequence dna-align/RBAM_022320___bkdAB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03579___bkdAB-RBAM_022320___bkdAB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03579___bkdAB-RBAM_022320___bkdAB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03579___bkdAB
# 2: RBAM_022320___bkdAB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 988
# Identity:     811/988 (82.1%)
# Similarity:   811/988 (82.1%)
# Gaps:           8/988 ( 0.8%)
# Score: 3337.0
# 
#
#=======================================

BSNT_03579___      1 ATGTCAGTAATGTCATATATTGATGCA--ATCAATTTGGCGATGAAAGAA     48
                     |||||.||||||||.||||||||  ||  ||.|||...||.|||||||||
RBAM_022320__      1 ATGTCTGTAATGTCTTATATTGA--CAGTATTAATGCAGCAATGAAAGAA     48

BSNT_03579___     49 GAAATGGAACGAGATTCTCGCGTTTTCGTCCTTGGGGAAGATGTAGGAAG     98
                     |||||||||.|||||.|.||||||||.||.||.||||||||.||.||.||
RBAM_022320__     49 GAAATGGAAAGAGATCCGCGCGTTTTTGTTCTCGGGGAAGACGTCGGGAG     98

BSNT_03579___     99 AAAAGGCGGTGTGTTTAAAGCGACAGCGGGACTCTATGAACAATTCGGGG    148
                     |||||||||.|||||||||||.||.|||||.|||||||||||.|||||.|
RBAM_022320__     99 AAAAGGCGGCGTGTTTAAAGCCACGGCGGGTCTCTATGAACAGTTCGGAG    148

BSNT_03579___    149 AAGAGCGCGTTATGGATACGCCGCTTGCTGAATCTGCGATCGCAGGAGTC    198
                     |||||||.||.|||||||||||||||||||||||.|||||.||.||.||.
RBAM_022320__    149 AAGAGCGGGTGATGGATACGCCGCTTGCTGAATCAGCGATTGCCGGTGTA    198

BSNT_03579___    199 GGTATCGGAGCGGCAATGTACGGAATGAGACCGATTGCTGAAATGCAGTT    248
                     ||.|||||.||.||.||||||||.|||.|.||||||||.||.||||||||
RBAM_022320__    199 GGGATCGGCGCCGCGATGTACGGCATGCGCCCGATTGCCGAGATGCAGTT    248

BSNT_03579___    249 TGCTGATTTCATTATGCCGGCAGTCAACCAAATTATTTCTGAAGCGGCTA    298
                     |||.|||||||||.||||.||.|||||||||||.|||||.||||||||.|
RBAM_022320__    249 TGCCGATTTCATTCTGCCTGCGGTCAACCAAATCATTTCAGAAGCGGCAA    298

BSNT_03579___    299 AAATCCGCTACCG--CAGCAACAATGACTGGAGCTGTCCGATTGTCGTCA    346
                     ||||.||||||||  ||  ||||||||.||||||||||||||.|||.|||
RBAM_022320__    299 AAATACGCTACCGTTCA--AACAATGATTGGAGCTGTCCGATGGTCATCA    346

BSNT_03579___    347 GAGCGCCATACGGCGGAGGCGTGCACGGAGCCCTGTATCATTCTCAATCA    396
                     |||||||.||||||||.|||||||||||.||..||||||||||.|||||.
RBAM_022320__    347 GAGCGCCTTACGGCGGCGGCGTGCACGGCGCGTTGTATCATTCCCAATCT    396

BSNT_03579___    397 GTCGAAGCAATTTTCGCCAACCAGCCCGGACTGAAAATTGTCATGCCATC    446
                     ||.||.||.|||||.|||||||||||.||.||.||||||||||||||.||
RBAM_022320__    397 GTGGAGGCCATTTTTGCCAACCAGCCGGGCCTTAAAATTGTCATGCCTTC    446

BSNT_03579___    447 AACACCATATGACGCCAAGGGTCTATTAAAAGCTGCAGTTCGTGACGAAG    496
                     |||.||.||||||||.||.||.||.||.|||||||||||.||||||||||
RBAM_022320__    447 AACTCCTTATGACGCAAAAGGGCTGTTGAAAGCTGCAGTCCGTGACGAAG    496

BSNT_03579___    497 ACCCAGTGCTGTTTTTTGAGCACAAGCGGGCGTACCGTCTGATAAAGGGA    546
                     |.||.|||||||||||.||.||.|||.|.||||||||||||||.||.||.
RBAM_022320__    497 ATCCGGTGCTGTTTTTCGAACATAAGAGAGCGTACCGTCTGATTAAAGGC    546

BSNT_03579___    547 GAGGTTCCGGCTGATGATTATGTCCTGCCAATCGGCAAGGCGGACGTAAA    596
                     ||.||.||.||.||||||||.|||||.||.|||||.||||||||.|||||
RBAM_022320__    547 GAAGTCCCTGCGGATGATTACGTCCTTCCGATCGGAAAGGCGGATGTAAA    596

BSNT_03579___    597 ACGGGAAGGCGACGACATCACAGTGATCACATACGGTCTGTGTGTCCACT    646
                     |||.||||||..||||||.||.||.||.||.|||||..|.||.|||||.|
RBAM_022320__    597 ACGCGAAGGCAGCGACATTACTGTTATTACGTACGGATTATGCGTCCATT    646

BSNT_03579___    647 TCGCCTTACAAGCTGCAGAACGTCTCGAAAAAGATGGCATTTCAGCGCAT    696
                     |.||..|.||.|||||.||.||.||.||||||||.||.|||||.||.||.
RBAM_022320__    647 TTGCTCTGCAGGCTGCCGAGCGCCTTGAAAAAGACGGAATTTCCGCACAC    696

BSNT_03579___    697 GTGGTGGATTTAAGAACAGTTTACCCGCCTGATAAAGAAGCCATCATCGA    746
                     ||..|.|||||..|.||.|||||.|||...|||||||||||||||||.||
RBAM_022320__    697 GTATTAGATTTGCGTACGGTTTATCCGTTAGATAAAGAAGCCATCATTGA    746

BSNT_03579___    747 AGCTGCGTCCAAAACTGGAAAGGTTCTTTTGGTCACAGAAGATACAAAAG    796
                     |||.|||||.|||||.|||||.||..|..||.|||||||||||||.||||
RBAM_022320__    747 AGCCGCGTCTAAAACAGGAAAAGTATTGCTGATCACAGAAGATACGAAAG    796

BSNT_03579___    797 AAGGCAGCATCATGAGCGAAGTAGCCGCAATTATATCCGAGCATTGTCTG    846
                     |||||.|.||.||||||||.||.|||||.|||||.||.||..|.||..|.
RBAM_022320__    797 AAGGCGGTATTATGAGCGAGGTCGCCGCTATTATTTCTGAAAACTGCTTA    846

BSNT_03579___    847 TTCGACTTAGACGCGCCAATCAAACGGCTTGCAGGTCCTGATATTCCGGC    896
                     ||.||.|||||||||||.|||||.|||||||||||||||||..|||||||
RBAM_022320__    847 TTTGATTTAGACGCGCCGATCAAGCGGCTTGCAGGTCCTGACGTTCCGGC    896

BSNT_03579___    897 TATGCCTTATGCGCCGACAATGGAAAAATACTTTATGGTCAACCCTGATA    946
                     .||||||||||||||||||||||||||||||||.|||.|.||.|||||.|
RBAM_022320__    897 AATGCCTTATGCGCCGACAATGGAAAAATACTTCATGATGAATCCTGACA    946

BSNT_03579___    947 AAGTGGAAGCGGCGATGAGAGAATTAGCGGAGTTTTAA    984
                     |||..|||||.|||||||||||||||||||||||||||
RBAM_022320__    947 AAGCAGAAGCCGCGATGAGAGAATTAGCGGAGTTTTAA    984


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