Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03580 and RBAM_022330

See Amino acid alignment / Visit BSNT_03580 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:50
# Commandline: needle
#    -asequence dna-align/BSNT_03580___bkdAA.1.9828.seq
#    -bsequence dna-align/RBAM_022330___bkdAA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03580___bkdAA-RBAM_022330___bkdAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03580___bkdAA-RBAM_022330___bkdAA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03580___bkdAA
# 2: RBAM_022330___bkdAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1000
# Identity:     804/1000 (80.4%)
# Similarity:   804/1000 (80.4%)
# Gaps:          14/1000 ( 1.4%)
# Score: 3209.0
# 
#
#=======================================

BSNT_03580___      1 ATGAGTACAAACCGACATCAAGCACTAGGGCTGACTGATCAGGAAGCCGT     50
                     ||||.|||||||||.|||||||||.|||||||..||||..|.||||||||
RBAM_022330__      1 ATGACTACAAACCGCCATCAAGCATTAGGGCTCTCTGACGAAGAAGCCGT     50

BSNT_03580___     51 TGATATGTATAGAACCATGCTGTTAGCAAGAAAAATCGATGAAAGAATGT    100
                     |||.|||||||||||||||||||||||.|||||||||||.||||||||||
RBAM_022330__     51 TGAAATGTATAGAACCATGCTGTTAGCCAGAAAAATCGACGAAAGAATGT    100

BSNT_03580___    101 GGCTGTTAAACCGTTCTGGCAAAATTCCATTTGTAATTTCTTGTCAAGGA    150
                     ||||.||||||||.||.|||||||||||.||.||..||||.|||||||||
RBAM_022330__    101 GGCTCTTAAACCGCTCGGGCAAAATTCCGTTCGTTGTTTCATGTCAAGGA    150

BSNT_03580___    151 CAGGAAGCAGCACAGGTAGGAGCGGCTTTCGCACTT-GACCGTGAAATGG    199
                     ||||||||.||.||.|||||.|||||.|..|| ||| .|||||||.|..|
RBAM_022330__    151 CAGGAAGCGGCGCAAGTAGGCGCGGCCTATGC-CTTAAACCGTGATACCG    199

BSNT_03580___    200 ATTATGTATTGCCGTACTACAGAGACATGGGTGTCGTGCTCGCGTTTGGC    249
                     |.|||||..|.||||||||||||||.||.||.||.|||||.||.||.||.
RBAM_022330__    200 ACTATGTGCTTCCGTACTACAGAGATATAGGGGTTGTGCTTGCATTCGGT    249

BSNT_03580___    250 ATGACAGCAAAGGACTTAATGATGTCCGGGTTTGCAAAAGCAGCAGATCC    299
                     |||||.||||||||.||.||||||||.||.|||||.||||||||.||.||
RBAM_022330__    250 ATGACTGCAAAGGATTTGATGATGTCGGGTTTTGCGAAAGCAGCTGACCC    299

BSNT_03580___    300 GAACTCAGGAGGCCGCCAGATGCCGGGACATTTCGGACAAAAGAAAAACC    349
                     |||||||||.||..|.|||||||||||.||.|||||.||||||||||||.
RBAM_022330__    300 GAACTCAGGCGGAAGGCAGATGCCGGGCCACTTCGGGCAAAAGAAAAACA    349

BSNT_03580___    350 GCATTGTGACGGGATCATCTCCGGTTACAACGCAAGTGCCGCACGCAGTC    399
                     |.||.||.|||||.|||||.||.|||||.|||||.|||||.||.||||||
RBAM_022330__    350 GAATCGTAACGGGCTCATCCCCTGTTACGACGCAGGTGCCTCATGCAGTC    399

BSNT_03580___    400 GGTATTGCGCTTGCGGGACGTATGGAGAAAAAGGATATCGCAGCCTTTGT    449
                     ||.||.||||||||||||||.|||||.|||||||||||||...|.||.||
RBAM_022330__    400 GGAATCGCGCTTGCGGGACGCATGGATAAAAAGGATATCGTCTCTTTCGT    449

BSNT_03580___    450 TACATTTGGGGAAGGGTCTTCAAACCAAGGCGATTTCCACGAAGGGGCAA    499
                     |||.|||||.|||||.|||||.|||||.||.|||||.|||||||||||||
RBAM_022330__    450 TACCTTTGGAGAAGGATCTTCCAACCAGGGGGATTTTCACGAAGGGGCAA    499

BSNT_03580___    500 ACTTTGCCGCTGTCCATAAGCTGCCGGTTATTTTCATGTGTGAAAACAAC    549
                     ||||||||||.||..||||.||||||||.||||||||||||||||||||.
RBAM_022330__    500 ACTTTGCCGCCGTGTATAAACTGCCGGTCATTTTCATGTGTGAAAACAAT    549

BSNT_03580___    550 AAATACGCAATCTCGGTGCCTTACGATAAGCAAGTCGCATGTGAGAACAT    599
                     ||.||.||.||.||.||.||.||.||.|..||.||.||.||.|||||.||
RBAM_022330__    550 AAGTATGCTATTTCTGTCCCGTATGACAGACAGGTGGCGTGCGAGAAAAT    599

BSNT_03580___    600 TTCCGACCGTGCCGTTGGCTATGGGATGCCTGGCGTAACTGTGAATGGAA    649
                     .||||||||.||.|..|||||.||.|||||.||.||.|||||..|.||||
RBAM_022330__    600 ATCCGACCGGGCGGCAGGCTACGGCATGCCGGGAGTCACTGTTGACGGAA    649

BSNT_03580___    650 ATGATCCGCTGGAAGTTTATCAAGCGGTCAAAGAAGCACGCGAAAGGGCA    699
                     |.||.|.||||||||||||.|..||.||.||||||||.||||||.||||.
RBAM_022330__    650 ACGACCTGCTGGAAGTTTACCGGGCCGTAAAAGAAGCGCGCGAACGGGCG    699

BSNT_03580___    700 CGCAGAGGAGAAGGCCCGACATTAATTGAAACGATTTCTTACCGCCTTAC    749
                     ...|.|||.||||||||.||||||||.||||||.||||.|||||..|.||
RBAM_022330__    700 TCTAAAGGCGAAGGCCCTACATTAATAGAAACGGTTTCCTACCGTTTGAC    749

BSNT_03580___    750 ACCACATTCCAGTGATGACGATGACAGCAGCTACAGAGGCCGTGAAGAAG    799
                     |||.|||||||||||||||||.||||||||||||||||..||.|||||||
RBAM_022330__    750 ACCGCATTCCAGTGATGACGACGACAGCAGCTACAGAGAACGCGAAGAAG    799

BSNT_03580___    800 TAGAGGAAGCGAAAAAAAGTGATCCCCTGCTTACTTAT--CAAGCTTACT    847
                     ||||.|||||.||.|||...|||||.||.|||  ||||  .||||.||||
RBAM_022330__    800 TAGAAGAAGCAAAGAAACAAGATCCGCTTCTT--TTATACAAAGCATACT    847

BSNT_03580___    848 TAAAGGAAACAGGCCTGCT--GTCCGATGAGATG--GAACAAACCATGCT    893
                     |.||.|||.|.||.||.||  ||  ||  |||.|  |||.|.||||||||
RBAM_022330__    848 TGAAAGAAGCCGGGCTTCTAGGT--GA--AGAAGAAGAAAAGACCATGCT    893

BSNT_03580___    894 GGATGAAATTATGGCAATCGTAAATGAAGCGACGGATGAAGCGGAGAACG    943
                     ||||||.||.|||||.||||||||.||||||||.||.|||||||||||.|
RBAM_022330__    894 GGATGACATCATGGCTATCGTAAACGAAGCGACAGACGAAGCGGAGAAAG    943

BSNT_03580___    944 CCCCTTATGCAGCTCCTGAGTCAGCGCTTGATTATGTGTATGCGAAGTAG    993
                     |.||.||.|||.|||||||.|||.||||||||.|.||.||||||||||||
RBAM_022330__    944 CGCCATACGCATCTCCTGAATCAACGCTTGATCACGTTTATGCGAAGTAG    993


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